RNA id: XR_004579409.1


Basic Information

Item Value
RNA id XR_004579409.1
length 1411
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC117598974
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 22137295 ~ 22139333 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACTGTGCTGTCAAGAGGACATCCTGGGCTTTCTAGTGATGCCACAGTTGTGGGGGTGTGGCTAACAGAGCACACAGACTTTCTTTTCAAAATGGCAGCCATTGCAGCTTCCACATTTTATGGCACCAAGGGAGTTTCAACCCTGTTGTGGAGGAGAACACTGTGCAAGACAATGCTGGCCACAACCACCAAGACTGGAGGCCCTCTGATTACTTCAAACAGTACATAGATAACCAGGTTTTTGAGaaaatgtcagaacacacaaaccAGCGGAGGTGCTCATCTCTGGAGGCAGCCTTAAAAACCACTCCAGAGGAGCTGAAAACCTTCTTTGGCATATCTATGTACATGGCATGCCTCGGATACCCTAGGATCCGGATGTACTGGGCAGCGAAGACGAGGGTCACAGTCATAGCCAATTCAATGAGTTGAGACAGATTCTTCAAGATTAGGCAGTCCATCAAACTCACAAATGATCTTGATGTCTCtgcagaggagaaaaagaatgatCCCCTCTGGAAGGTAAGACCTCTCTTAAACAGAGTGCAACAAGGCTGCCTCAATCTGCCAAGACCAGGGAAGGCCTGTGTAGATGAGCAGATGATACCCTTCACAGGTCGGTGTCCTGTACGGCAGTTTGTGCCAGGGAAACCAAATCCCACAGGACTGTGCTTGCCATTCCCAATGGTCTGGTGCTGGATTTTGAAGTTTACAAGGACCGGAATACGTTCACTGACCAGCAGCTGGGAATCGAAGGGAATGCAGTCGCTCGGATGGCACAGTCTCTTCCAAGAGGAACACACCTGTACTTTGACAGATATTTCACTTCTATCAAAGTACTGGATATGTTGAAAGCAAATGGTCTCCTGGGAACAGGGACCATTATGAAAAATAGAATCCCTGCACTGTGCAAGTCAAAGATGTCAGATGACaccaaactaaaaaaacaaggaaaaggtGCATCTGAAATGGTTGTCAGAAAACCATTAGAGGTTGCAGTGACGAAGTGGCAGGACAATAAGGCAATTCTGATGGCCTCCAGTGTCCATGGGATAGAGCCCCAGGACAGCTGCCTGAGATGGTCAGCAAAAGAGAAGTGCCATGTAACTGTGCCTAGACCTGCTGTTGTGGCTGAGTACAACAAAAACATGGGTGGAGTTGATTTGCGCACTAGGAGATTTAATtcctaaaataatgttttagtGTTCATATGTGCTTCCTTCATCTAACTGTTCAGTTCATGAATCGGTTCACGTTTTGACTCAGttcatgaaaagaaaagaaattttaaCAGAAATCTGCGTGAAAATGAATACGTTACATTCATTACATTCTGTGATCAAAAAAGACCTGATGTCCACTTCAAGGGAcagatgataaaaaataaataaataaaatttttgaattttt

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome
ko04668 TNF signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU254629 lncRNA upstream 217 21724611 ~ 22137078 (+) True G215059
TU254689 lncRNA upstream 4286 22077490 ~ 22133009 (+) True G215095
TU254686 lncRNA upstream 77539 22058344 ~ 22059756 (+) True G215093
TU254600 lncRNA upstream 116560 22015818 ~ 22020735 (+) True G215035
TU254643 lncRNA upstream 142230 21916419 ~ 21995065 (+) True G215069
TU254726 lncRNA downstream 121558 22260891 ~ 22282993 (+) True G215127
TU254755 lncRNA downstream 200888 22340221 ~ 22343637 (+) True G215149
TU254759 lncRNA downstream 262617 22401950 ~ 22405524 (+) True G215153
TU255084 lncRNA downstream 585354 22724687 ~ 22726646 (+) True G215294
TU255128 lncRNA downstream 596438 22735771 ~ 22735986 (+) True G215336
XM_034309812.1 mRNA upstream 505389 21620631 ~ 21631906 (+) True rest
XM_034309844.1 mRNA upstream 573494 21514573 ~ 21563801 (+) False LOC113540569
XM_034309814.1 mRNA downstream 323821 22463154 ~ 22490911 (+) True LOC113546930
XM_034309815.1 mRNA downstream 398169 22537502 ~ 22548866 (+) True LOC113546929
XM_026947097.2 mRNA downstream 475526 22614859 ~ 22621980 (+) True cckb
XM_034310060.1 mRNA downstream 594402 22733735 ~ 22754432 (+) False rnf44
XM_034310059.1 mRNA downstream 601607 22740940 ~ 22754432 (+) True rnf44
TU254585 other upstream 6113 22126928 ~ 22131182 (+) True LOC117598947
LOC117598947 other upstream 6119 22126937 ~ 22131176 (+) False LOC117598947
TU254598 other upstream 16832 22119975 ~ 22120463 (+) True LOC117598959
LOC117598959 other upstream 16837 22120027 ~ 22120458 (+) False LOC117598959
TU254647 other upstream 23342 22113281 ~ 22113953 (+) False G215072
LOC117598906 other downstream 1451 22140784 ~ 22141255 (+) True LOC117598906
TU254577 other downstream 2665 22141998 ~ 22183982 (+) True G215012
LOC117598961 other downstream 2752 22142085 ~ 22142516 (+) True LOC117598961
LOC113546937 other downstream 5617 22144950 ~ 22145717 (+) True LOC113546937
LOC117598805 other downstream 7798 22147131 ~ 22148445 (+) True LOC117598805

Expression Profile