Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579414.1 |
| length | 670 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 4 |
| gene id | LOC113528473 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 20264198 ~ 20393220 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU253575 | lncRNA | upstream | 49771 | 20213406 ~ 20214427 (+) | True | G214144 |
| TU253526 | lncRNA | upstream | 82320 | 20071695 ~ 20181878 (+) | False | G214098 |
| TU253523 | lncRNA | upstream | 111505 | 20141415 ~ 20152693 (+) | False | G214098 |
| TU253520 | lncRNA | upstream | 119601 | 20141415 ~ 20144597 (+) | True | G214098 |
| TU253415 | lncRNA | upstream | 294042 | 19968008 ~ 19970156 (+) | True | G214012 |
| TU253833 | lncRNA | downstream | 96676 | 20471529 ~ 20471764 (+) | True | G214369 |
| XR_004579420.1 | lncRNA | downstream | 470288 | 20845141 ~ 20852594 (+) | True | LOC117598998 |
| TU254014 | lncRNA | downstream | 470294 | 20845147 ~ 20845347 (+) | False | LOC117598998 |
| TU254040 | lncRNA | downstream | 533975 | 20908828 ~ 20926678 (+) | True | G214548 |
| TU254148 | lncRNA | downstream | 636921 | 21011774 ~ 21024087 (+) | True | nudt6 |
| XM_034310264.1 | mRNA | upstream | 90846 | 20022513 ~ 20173352 (+) | False | LOC113528520 |
| XM_026917114.2 | mRNA | upstream | 90846 | 20160958 ~ 20173352 (+) | True | LOC113528520 |
| XM_026917116.2 | mRNA | upstream | 90846 | 20161611 ~ 20173352 (+) | False | LOC113528520 |
| XM_026917105.2 | mRNA | upstream | 261518 | 20000958 ~ 20002680 (+) | True | drd5a |
| XM_026917102.2 | mRNA | upstream | 267265 | 19983865 ~ 19996933 (+) | False | zbtb49 |
| XM_026917157.2 | mRNA | downstream | 55788 | 20430641 ~ 20438868 (+) | True | leprotl1 |
| XM_026917123.1 | mRNA | downstream | 64588 | 20439441 ~ 20444946 (+) | False | LOC113528524 |
| XM_026917122.1 | mRNA | downstream | 64590 | 20439443 ~ 20444946 (+) | True | LOC113528524 |
| XM_026916633.2 | mRNA | downstream | 371855 | 20746708 ~ 20779232 (+) | True | ankrd50 |
| XM_034310040.1 | mRNA | downstream | 637357 | 21012210 ~ 21013848 (+) | False | nudt6 |
| XR_004579430.1 | other | upstream | 187790 | 20022509 ~ 20076408 (+) | False | LOC113528520 |
| TU253418 | other | upstream | 282818 | 19978314 ~ 19981380 (+) | True | G214015 |
| XR_004579366.1 | other | upstream | 310912 | 19933824 ~ 19953286 (+) | False | LOC113528304 |
| TU253379 | other | upstream | 354033 | 19906202 ~ 19910165 (+) | False | LOC113528458 |
| XR_004579333.1 | other | upstream | 950980 | 19301355 ~ 19313218 (+) | True | gng13b |
| TU254301 | other | downstream | 965563 | 21340416 ~ 21349086 (+) | True | hopx |
| TU254300 | other | downstream | 966394 | 21341247 ~ 21348829 (+) | False | hopx |
| TU254302 | other | downstream | 966394 | 21341247 ~ 21348829 (+) | False | hopx |
| TU254303 | other | downstream | 966394 | 21341247 ~ 21348829 (+) | False | hopx |
| TU254299 | other | downstream | 966713 | 21341566 ~ 21348829 (+) | False | hopx |
