RNA id: XR_004579419.1


Basic Information

Item Value
RNA id XR_004579419.1
length 2125
lncRNA type inter_gene
GC content 0.45
exon number 5
gene id LOC117598997
representative False

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 9441986 ~ 9446104 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAATTGGAAGATGATCAGGAATGAATCATCCATGAGGTGGGAACTGGATTCCTGTTTATCTCCTGCGTATTTTGTTCATCAGTTAATCACAGCAGAGATGAAGGTGTGCTGTAATACAGAGACCACAGCACAGAAACTGACCAATGAGCTGCGTTGCTGTTTTTGCATCAGAGGCTGTCTGGACTTTTACTCTCCAGCACAAAGAAAACATCATTGCTGTATcaaattaagtaattaagtatTATTTGACAGACCAAGtcagacaaagaaaaatCCAGCTGTGCCACCTCTCCCCTCCCCCTACTAAAATACGGGAGGAAAAAACAGTGGAAGGCTGGGGACAAAGGACGGCGTGGGAACTGCATATGATCAGAGCTCGGAAAAAAATCAGCGGTTTGGTACTGGGACCATATCTTCAGTGATCCAGCCATCTTCAAGACCCCCTCCTCCATTTTCGCACAGGAGATCCGCTAACAGGAAATCAATGCCCTTCTTTTGTAGCTACAATTTTTGGACATCCTTATTGTGTCCTTTTCTTATCTACTGTCTGGTGTATGTGGGCTGGATGTGTCAGGTTCTCATATCATCTTGCAAAGGGAGGATTTCATATCTGAAATACTGTTGGTTGTGTTTTTAGGACAAAATGCTAGACCATCTTGATATATCTTTAAAACCTTTACACTGTTTGGTAGTAGGAGGCTTGATAGACTTCCTTTTGAGCCCCTCATGCTTCTTTAATGGGGCCAACACAAACACGCGTGGGCCCACAGCAGGGCTCCAAATGAACCTGGTCAAGAACATGAAGAAGGAAAGCAGAAATTAAACGTTTGCAGAATGCTGGTGTAGCACCTCCTCCTGCAGCACCATACGATTCCCACTGAGCTGTAATACATCATTTGAGTAGCTGCTCCAGCGAAGGACATATCCCACAATGCCCTGCAAGGCGGGGTGCCGGGGTACCCGTTGTGGCACACTCGCACGCCTCCATGTGCCACGTTAACTTtccatttgtctttcttttcctgTCAGCAAATATTATGTGGAAAGGGATCCTCTCTGGCAGAACTGTGATCTATCTGAGCTAGTAAATGACTATGTCTATTTTATTCAAAGAGGAATTTCAAATGCCAAAATGCCTTCAGTAGTTCTAGAGTGTCACACACGCTAATCTCTCAGTTAGCATGAATTCTTTGCCATGAAGAATAAAATGCAATGCTAATGTTGGCTCTAGATAGCCCAAACAGCAGAATGTATTGTGATCGCTCTAATGGGACAGAAAAGATAAGCCATTTGATTACTTTCATTTGTCTTCATGTGTTCGGACTTTTTCCTGCCTTGAGTTTGTGCTTCATTACctgtgtgatttttgtgataCATTCTGTTACGAGGACAAGCTGTGATTTTGAGtaatgtgtgtatcagtgtggtGTAGACAGGTAACCGCTGCCTAATGCACACTCACAAATGTATTTGTCCTCATACATATTCTGATTGGGGAAATATCACAGCCAGGAAAATGTCTGCGACAGGCAAGATAGAGTAACCTCAGAGAGAGTGAACgatagaaaagagagagagagagagagagagagagagagagggagggagggaggaagggaggtATTTGTCAGGGATATGGATAAACCAGACATGCAGAGACATGGGTTGACTGCTGGCAATCACGGAAAACAGTAAGTCCTGTTCAACGGTGAAAAGGAGAGCATGGAATAGAGACAGGAAAAAGGAacgagagtgagagtgagagcgagagcgagacgGGGCACAGGTTGGCCAGTTGTCAGGGCAACACCAGGCCCCTGGAGAGGAAAGGGGGTGCCTGGTCTCGGCTGGCAAGCAGAACACCTGCCCTCCTCTGATCTGTAGGGAATTACCCTGCTCGAGAGCAGATGAGGACCCTtaaaattagagagagagaaagcaagaaagagagagaggagtccAACCACCATGAGCATCTGTCCAATGAGAGgagttgaatttatttattatcttggAGGAAGAGGTGGTTCCATGGGGGTTTGATTAATGTCCAGCCCTCCATCTTGTCAGTCTGTTTTTGTCCGCTGAAAGGAAAACAAAGCGTGGGGGGCTGAGAGAGCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU246658 lncRNA downstream 318105 9122196 ~ 9123881 (-) False LOC113527952
TU246570 lncRNA downstream 338860 9102911 ~ 9103126 (-) True G208189
TU246536 lncRNA downstream 378479 9061580 ~ 9063507 (-) True G208158
TU246531 lncRNA downstream 411008 9030525 ~ 9030978 (-) True G208153
TU246529 lncRNA downstream 417003 9024761 ~ 9024983 (-) True G208151
TU246838 lncRNA upstream 48519 9494623 ~ 9505750 (-) True G208391
TU246919 lncRNA upstream 283765 9729869 ~ 9731447 (-) False hoxb8a
TU246954 lncRNA upstream 300392 9746496 ~ 9748039 (-) True G208473
XR_004579453.1 lncRNA upstream 383523 9829627 ~ 9844421 (-) False LOC117599011
XR_004579454.1 lncRNA upstream 383523 9829627 ~ 9843423 (-) False LOC117599011
XM_026916595.1 mRNA downstream 26957 9414691 ~ 9415029 (-) False prr15la
XM_034310057.1 mRNA downstream 29376 9401685 ~ 9412610 (-) True LOC113528600
XM_026917248.2 mRNA downstream 33325 9401685 ~ 9408661 (-) False LOC113528600
XM_034309943.1 mRNA downstream 50626 9380674 ~ 9391360 (-) True adsl
XM_034309942.1 mRNA downstream 51236 9380674 ~ 9390750 (-) False adsl
XM_026917026.2 mRNA upstream 18227 9464331 ~ 9474478 (-) False copz2
XM_026917024.2 mRNA upstream 18227 9464331 ~ 9474478 (-) True copz2
XM_034309695.1 mRNA upstream 44244 9490348 ~ 9501580 (-) True cbx1a
XM_026916348.2 mRNA upstream 44244 9490348 ~ 9501577 (-) False cbx1a
XM_026916891.2 mRNA upstream 208339 9654443 ~ 9658406 (-) True hoxb1a
TU246802 other downstream 22402 9409804 ~ 9419584 (-) False prr15la
TU246803 other downstream 22402 9409804 ~ 9419584 (-) False prr15la
TU246806 other downstream 22402 9409804 ~ 9419584 (-) False prr15la
TU246804 other downstream 22402 9413601 ~ 9419584 (-) True prr15la
TU246677 other downstream 238346 9196496 ~ 9203640 (-) False dnal4a
XR_004579423.1 other upstream 20376 9466480 ~ 9474478 (-) False copz2
XR_004579397.1 other upstream 284738 9730842 ~ 9731250 (-) False hoxb8a
trnac-gca_22 other upstream 938945 10385049 ~ 10385120 (-) True trnac-gca_22
XR_003402902.2 other upstream 1005392 10451496 ~ 10470518 (-) False tecpr1b
XR_003402978.2 other upstream 1986406 11432510 ~ 11432628 (-) True LOC113528663

Expression Profile