Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579429.1 |
| length | 692 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 3 |
| gene id | LOC117599001 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 1525663 ~ 1528233 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0022402 | cell cycle process | biological_process |
| GO:0098813 | nuclear chromosome segregation | biological_process |
| GO:0000819 | sister chromatid segregation | biological_process |
| GO:0000070 | mitotic sister chromatid segregation | biological_process |
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0140014 | mitotic nuclear division | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0048285 | organelle fission | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:0007059 | chromosome segregation | biological_process |
| GO:0030261 | chromosome condensation | biological_process |
| GO:0007076 | mitotic chromosome condensation | biological_process |
| GO:1903047 | mitotic cell cycle process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0000280 | nuclear division | biological_process |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU241307 | lncRNA | downstream | 24848 | 1499020 ~ 1500815 (-) | True | G203733 |
| TU241309 | lncRNA | downstream | 24848 | 1499020 ~ 1500815 (-) | False | G203733 |
| TU241318 | lncRNA | downstream | 68265 | 1455187 ~ 1457398 (-) | True | G203739 |
| TU241259 | lncRNA | downstream | 180492 | 1344217 ~ 1345171 (-) | True | G203695 |
| TU241258 | lncRNA | downstream | 259309 | 1265662 ~ 1266354 (-) | False | G203695 |
| XR_004579328.1 | lncRNA | upstream | 189780 | 1718013 ~ 1718791 (-) | True | LOC117598750 |
| TU241710 | lncRNA | upstream | 202768 | 1731001 ~ 1731200 (-) | True | G204080 |
| TU241714 | lncRNA | upstream | 207285 | 1735518 ~ 1735720 (-) | True | G204084 |
| TU241717 | lncRNA | upstream | 221949 | 1750182 ~ 1750391 (-) | True | G204087 |
| TU241720 | lncRNA | upstream | 238418 | 1766651 ~ 1766869 (-) | True | G204090 |
| XM_026916145.2 | mRNA | downstream | 209488 | 1309888 ~ 1316175 (-) | True | LOC113527946 |
| XM_034309793.1 | mRNA | downstream | 219300 | 1302401 ~ 1306363 (-) | True | LOC113528189 |
| XM_034309758.1 | mRNA | downstream | 231424 | 1282400 ~ 1294239 (-) | True | LOC113525779 |
| XM_034309759.1 | mRNA | downstream | 246111 | 1268382 ~ 1279552 (-) | True | LOC113528234 |
| XM_034310229.1 | mRNA | upstream | 239073 | 1767306 ~ 1812044 (-) | False | mybpc2a |
| XM_034310228.1 | mRNA | upstream | 239073 | 1767306 ~ 1812044 (-) | False | mybpc2a |
| XM_034310227.1 | mRNA | upstream | 239073 | 1767306 ~ 1812044 (-) | True | mybpc2a |
| XM_034310020.1 | mRNA | upstream | 313756 | 1841989 ~ 1859709 (-) | False | akt1s1 |
| XM_034310018.1 | mRNA | upstream | 313756 | 1841989 ~ 1850490 (-) | False | akt1s1 |
| XR_003402974.1 | other | downstream | 26058 | 1499515 ~ 1499605 (-) | True | LOC113528659 |
| XR_003402975.1 | other | downstream | 26313 | 1499261 ~ 1499350 (-) | True | LOC113528660 |
| TU241260 | other | downstream | 180492 | 1265662 ~ 1345171 (-) | False | G203695 |
| TU241084 | other | downstream | 479108 | 1044737 ~ 1046555 (-) | False | si:dkey-66i24.7 |
| TU241063 | other | downstream | 614435 | 910117 ~ 911228 (-) | True | G203544 |
| XR_004579451.1 | other | upstream | 475301 | 2003534 ~ 2007788 (-) | False | LOC113527889 |
| XR_004579450.1 | other | upstream | 475301 | 2003534 ~ 2007787 (-) | False | LOC113527889 |
| XR_004579338.1 | other | upstream | 1071476 | 2599709 ~ 2600352 (-) | True | LOC117598767 |
| XR_003402970.1 | other | upstream | 1627063 | 3155296 ~ 3155430 (-) | True | LOC113528655 |
| XR_003402972.1 | other | upstream | 1628384 | 3156617 ~ 3156709 (-) | True | LOC113528657 |
