Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579433.1 |
| length | 1233 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 8 |
| gene id | LOC113528543 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 8499754 ~ 8534003 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU246111 | lncRNA | upstream | 13819 | 8485636 ~ 8485935 (+) | True | G207845 |
| TU245973 | lncRNA | upstream | 209849 | 8287457 ~ 8289905 (+) | True | G207717 |
| TU245854 | lncRNA | upstream | 248773 | 8236733 ~ 8250981 (+) | True | G207612 |
| XR_003402951.2 | lncRNA | upstream | 289887 | 8209298 ~ 8209867 (+) | True | LOC113528504 |
| TU245858 | lncRNA | upstream | 298162 | 8201292 ~ 8201592 (+) | True | G207616 |
| TU246201 | lncRNA | downstream | 158718 | 8692721 ~ 8717277 (+) | True | G207927 |
| TU246197 | lncRNA | downstream | 218712 | 8752715 ~ 8759793 (+) | False | LOC113528294 |
| XR_004579363.1 | lncRNA | downstream | 219244 | 8753247 ~ 8759792 (+) | False | LOC113528294 |
| TU246198 | lncRNA | downstream | 220698 | 8754701 ~ 8772476 (+) | False | LOC113528294 |
| XR_003402924.2 | lncRNA | downstream | 221314 | 8755317 ~ 8759792 (+) | True | LOC113528294 |
| XM_026917121.2 | mRNA | upstream | 14810 | 8454003 ~ 8484944 (+) | True | LOC113528522 |
| XM_026917167.2 | mRNA | upstream | 141603 | 8311016 ~ 8358151 (+) | True | ngfra |
| XM_026916463.2 | mRNA | upstream | 273749 | 8219525 ~ 8226005 (+) | True | tmub2 |
| XM_026916464.2 | mRNA | upstream | 273749 | 8219527 ~ 8226005 (+) | False | tmub2 |
| XM_026916181.2 | mRNA | upstream | 281403 | 8212034 ~ 8218351 (+) | True | asb16 |
| XM_034310186.1 | mRNA | downstream | 309194 | 8843197 ~ 8873465 (+) | True | LOC113528198 |
| XM_034310049.1 | mRNA | downstream | 342229 | 8876232 ~ 8882985 (+) | True | LOC113528197 |
| XM_026916345.2 | mRNA | downstream | 353402 | 8887405 ~ 8893797 (+) | True | LOC113528067 |
| XM_034310187.1 | mRNA | downstream | 368725 | 8902728 ~ 8904664 (+) | True | LOC113528196 |
| XM_034310050.1 | mRNA | downstream | 375667 | 8909670 ~ 8915323 (+) | True | LOC113528195 |
| trnas-cga_1 | other | upstream | 491487 | 8008186 ~ 8008267 (+) | False | trnas-cga_1 |
| TU245701 | other | upstream | 646245 | 7853191 ~ 7853509 (+) | True | G207480 |
| trnac-gca_21 | other | upstream | 1200070 | 7299613 ~ 7299684 (+) | True | trnac-gca_21 |
| trnac-gca_18 | other | upstream | 1227223 | 7272460 ~ 7272531 (+) | True | trnac-gca_18 |
| XR_004579327.1 | other | upstream | 1383819 | 7108178 ~ 7115935 (+) | False | LOC113528597 |
| XR_003402909.1 | other | downstream | 362615 | 8896618 ~ 8902677 (+) | True | LOC113528069 |
| TU246534 | other | downstream | 527562 | 9061565 ~ 9063315 (+) | False | nupr1b |
| XR_003402918.2 | other | downstream | 1410303 | 9944306 ~ 9979954 (+) | False | rapgefl1 |
| TU247340 | other | downstream | 1815399 | 10349402 ~ 10417881 (+) | False | G208781 |
| TU247338 | other | downstream | 1838412 | 10372415 ~ 10417881 (+) | False | G208781 |
