Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004579445.1 |
| length | 339 |
| lncRNA type | inter_gene |
| GC content | 0.42 |
| exon number | 4 |
| gene id | LOC117599005 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047607.1 |
| NCBI id | CM018553.1 |
| chromosome length | 26458119 |
| location | 5868862 ~ 5869806 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU244156 | lncRNA | upstream | 111923 | 5754852 ~ 5756939 (+) | True | G206221 |
| TU244143 | lncRNA | upstream | 133255 | 5735370 ~ 5735607 (+) | True | G206212 |
| TU244073 | lncRNA | upstream | 239203 | 5629458 ~ 5629659 (+) | True | G206157 |
| TU243315 | lncRNA | upstream | 787658 | 5079987 ~ 5081204 (+) | True | G205454 |
| TU243310 | lncRNA | upstream | 854346 | 5003626 ~ 5014516 (+) | True | gosr2 |
| TU244231 | lncRNA | downstream | 27579 | 5897385 ~ 5898200 (+) | False | tmem98 |
| TU244235 | lncRNA | downstream | 48639 | 5918445 ~ 5925185 (+) | True | G206289 |
| TU244238 | lncRNA | downstream | 67442 | 5937248 ~ 5964081 (+) | True | G206291 |
| TU244254 | lncRNA | downstream | 71073 | 5940879 ~ 5944432 (+) | True | G206301 |
| TU244306 | lncRNA | downstream | 120801 | 5990607 ~ 5992072 (+) | True | G206339 |
| XM_026917073.2 | mRNA | upstream | 44662 | 5788721 ~ 5824200 (+) | True | kcnj19a |
| XM_026916897.2 | mRNA | upstream | 241882 | 5108421 ~ 5626980 (+) | False | asic2 |
| XM_034310193.1 | mRNA | upstream | 241882 | 5115179 ~ 5626980 (+) | False | asic2 |
| XM_026916896.2 | mRNA | upstream | 241882 | 5494957 ~ 5626980 (+) | True | asic2 |
| XM_026916179.2 | mRNA | upstream | 764988 | 5096322 ~ 5103874 (+) | True | hrob |
| XM_026916323.2 | mRNA | downstream | 19746 | 5889552 ~ 5897559 (+) | True | tmem98 |
| XM_026916324.2 | mRNA | downstream | 19777 | 5889583 ~ 5897559 (+) | False | tmem98 |
| XM_026917100.2 | mRNA | downstream | 154490 | 6024296 ~ 6025839 (+) | True | LOC113528511 |
| XM_026916485.2 | mRNA | downstream | 249687 | 6119493 ~ 6128811 (+) | True | zgc:100868 |
| XM_026916487.2 | mRNA | downstream | 249719 | 6119525 ~ 6128811 (+) | False | zgc:100868 |
| TU244082 | other | upstream | 208014 | 5657612 ~ 5660848 (+) | True | G206166 |
| XR_003402965.1 | other | upstream | 777530 | 5091248 ~ 5091332 (+) | True | LOC113528649 |
| XR_003402966.1 | other | upstream | 777946 | 5090832 ~ 5090916 (+) | True | LOC113528650 |
| XR_003402964.1 | other | upstream | 778258 | 5090520 ~ 5090604 (+) | True | LOC113528648 |
| XR_003402967.1 | other | upstream | 778579 | 5090198 ~ 5090283 (+) | True | LOC113528651 |
| TU244359 | other | downstream | 260977 | 6130783 ~ 6134571 (+) | True | si:ch211-198p11.6 |
| TU244360 | other | downstream | 260977 | 6130783 ~ 6134571 (+) | False | si:ch211-198p11.6 |
| XR_004579365.1 | other | downstream | 290528 | 6160334 ~ 6175366 (+) | False | mapk3 |
| TU244376 | other | downstream | 320359 | 6190165 ~ 6194964 (+) | True | ypel3 |
| TU244415 | other | downstream | 384662 | 6254468 ~ 6260857 (+) | False | LOC117598831 |
