RNA id: trnac-gca_21


Basic Information

Item Value
RNA id trnac-gca_21
length 72
RNA type tRNA
GC content 0.57
exon number 1
gene id trnac-gca_21
representative True

Chromosome Information

Item Value
chromosome id NC_047607.1
NCBI id CM018553.1
chromosome length 26458119
location 7299613 ~ 7299684 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGGTATAGCTCAGTGGTAGAGCATTTGACTGCAGATCAAGAGGTCCCCGGTTCAAATCCGGGTGCCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU245223 lncRNA upstream 2640 7294485 ~ 7296973 (+) True G207084
TU245151 lncRNA upstream 240794 7054386 ~ 7058819 (+) True G207025
TU245054 lncRNA upstream 297445 6930320 ~ 7002168 (+) True G206955
TU245037 lncRNA upstream 368227 6898842 ~ 6931386 (+) False G206942
TU245030 lncRNA upstream 399681 6898842 ~ 6899932 (+) True G206942
TU245258 lncRNA downstream 18343 7318027 ~ 7318360 (+) True G207111
TU245255 lncRNA downstream 19454 7319138 ~ 7321930 (+) False spsb3a
TU245299 lncRNA downstream 86332 7386016 ~ 7388543 (+) True G207140
TU245320 lncRNA downstream 140393 7440077 ~ 7440281 (+) True G207155
TU245322 lncRNA downstream 143385 7443069 ~ 7443753 (+) True G207157
XM_034310102.1 mRNA upstream 9233 7274904 ~ 7290380 (+) True lasp1
XM_026916027.2 mRNA upstream 31700 7263146 ~ 7267913 (+) True arl5c
XM_026916677.2 mRNA upstream 39750 7227343 ~ 7259863 (+) False cacnb1
XM_026916935.2 mRNA downstream 2739 7302423 ~ 7305900 (+) True atp6v0ca
XM_026916977.2 mRNA downstream 9523 7309207 ~ 7321965 (+) True spsb3a
XM_026916980.2 mRNA downstream 9523 7309207 ~ 7321965 (+) False spsb3a
XM_026916978.2 mRNA downstream 9523 7309207 ~ 7321965 (+) False spsb3a
XM_026916981.2 mRNA downstream 9523 7309207 ~ 7321965 (+) False spsb3a
trnac-gca_18 other upstream 27082 7272460 ~ 7272531 (+) True trnac-gca_18
XR_004579327.1 other upstream 183678 7108178 ~ 7115935 (+) False LOC113528597
XR_003402939.2 other upstream 202934 7084441 ~ 7096679 (+) False eftud2
TU244415 other upstream 1038756 6254468 ~ 6260857 (+) False LOC117598831
TU244376 other upstream 1104649 6190165 ~ 6194964 (+) True ypel3
TU245701 other downstream 553507 7853191 ~ 7853509 (+) True G207480
trnas-cga_1 other downstream 708502 8008186 ~ 8008267 (+) False trnas-cga_1
XR_003402909.1 other downstream 1596934 8896618 ~ 8902677 (+) True LOC113528069
TU246534 other downstream 1761881 9061565 ~ 9063315 (+) False nupr1b
XR_003402918.2 other downstream 2644622 9944306 ~ 9979954 (+) False rapgefl1