RNA id: XM_034305668.1


Basic Information

Item Value
RNA id XM_034305668.1
length 2592
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC113542827
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9965785 ~ 9973795 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCACTTGTGGCACCTGAAATCAGAGATGGATGTATGCACATTCATACAGCTCATACCTACTGTCCAGCCACTACAGTCCTATGAGTCATGTTTCTTATATCCAACGGGCTACAGCtgagaagcagaaaaaaacGGCATGGCATCAAAGGTCACATTAAAAggtcacattaaaaaaagaagtggaACGCTCCCAGAAAGAACTTGTTGAAGTTTTCAACACACTCCTTCAAAAGCATAAAcatactttcactattaaaccgCAGTTTATGTACTGCAAATCCCTGAAACAGAGCCTATCCCTTAATGAATGCTTGACTCGTGTGGATTTGTCTGAGAATTATGACTGTAAATACAGTTCAGTCATAACAACTCTCGGAATGAATTTAACAGCTTTTATTGATGGAAATGACGTGTAGGTAGGTTTGGGCTTGGTGGTCTAGATCTGCTACGCTGCTGttgcttctgcttctgctgaGCAAGTATGCAGACTTGCTCTGCTAGACATATTCAGACCTAGAGATAAGAGAACCATCTATAGGAGGATCTATACCATGGTGCTGGGGAGGAGGAGGGAAGGATGAGAAAATGTCTTAGCATGCACCAAGGCTGTGCCAGGCGAGTTAGTCGGGATAATAATGGGTTACGTAGATAGTGAAGCTTGGCCTAGACTGCAGCACTGGCGTCAAGGGAACCAATCAGCGCACGGATAGAGTTTCATGGCTGAACTAGACATTTCAGAGATACACGCAGTTCAATTTGGGTCTTCACACCAGCAGGCCACACTGCAAACTGGTGTTCTGTACTTTGGTGGAACAATCAGTCCCATCAGTTTCAGCACTCTGTCACCATCTAAACAGGAAGGTCCTCCTGCAATATGGCAGCACTTGAAGCCAGTGCTCGAATATGTGCAGGATGAACATCCAGATGTCTCCATTGTGCACTTCTTTAGTGATAGTCCATGCACACAACACAAAAAGGACAGGTTTTCCTCTTTAGCACAGAACTTGTCAAAAGTAGGTTCAAGGCAGGTACTTGGAATTTCTTTGAAGCCAGCCATGGCAATGGTGCCCCTGATGGGGTGGGAGGATCACTGAAGAGGACAGCTGACAGTCTTGTATCCAGACTGATATCCTAGATGCTGCTGCACTGTTTAGGATCCTGAAAGCCACTGACACAACTGCAAAGTTGTTCTAGATGTGGATGAAGACGTGATTGATGATGAGGGCAGACAAGAAATGCCCAGAGACGTCCCTGCTGTACCATCCACCATGAGGTTGGTCACTCTTGCCCCTGGCCAGATCAGATATCGAGATGTCAGCTTCCTGTACTCTACAATGGGCAAACTGGATGCAATGTGCTATTCATCAAAGAGAGAAATGCAGCAAAATCTTGCAGACAGCAATGGAAAGAATGACCTCTCAGAGCCAGTTATTCCTCTCCATAGTTACATGCATGGTGGAATATCCAGCCTCGTCTGCACCGTCATCACTTTCCCCGTGTACAAAACTGTGTTTCGCCAGCAGTTGCACAGCACACTGATCCGTGAGGCTGTGTTGCAGCTGTATGAGGAAGGGCTGCTAAAGCTTTACCGTGGAGTAGTGCCACCCATGCTGATGAAGACTCTTCAGGGAACCATCCTCTTTGGCTTCCAGAACACTTTCCTGCAGCAGCTATCCCCTTGGGCTGAAATATATTTTCCCAGGGCAGTGCTTCCTGCCGTGGCCGGGCTCGGGACAGGGGTAGtggagtgtttgttttttacccCCTTCGAGCGCGTACAGAGTATCCTACAAAACAGTGGCAACGATCGTAGCCTTCCCACTCTCAGCAAAATTGTGGGCCGGCTGAGGTCCGAAACGTTAGCGAATGGATGGTACCGAGCTTTTTTACCCACTCTTACTCGCAACGCATTAGGGAGCGGTCTTTACTTTGGCCTGAAGGATCCATTGGCCAGAGTGTTATGTGAGAAAGATTGTCCCCCCATAGCCTCATCTTTTGTGTCAGGGATGGTCAGCTCCATTGTGATTAGCTTGCCCTTGTAtccactctcagtgctggtggCCAACATGCAGGCCCAGGTCGGTGGAGATAACCTGGGGGTGAGGGCCAGCTGGCATCAGCTGTGGCAGAAACGACAGCGAAGTCTGGTATTGCTGTACCGTGGAGGATCACTGGTCATCCTGCGCTCTTGCATCTCTTGGGGCATCACCACTGCCATATACGACCAGCTGATGAAACGCTCGGGCTGAGGAATACTATCAGGACAACTTCTCCTCTGGAAGGTGGATATATTGAATTTGTGAAAACGTTTAACATTTAACCACTAAACCCATCTCAGGCAGCagtttctcatttcttttcaaGGTTTCATGGCTAacaatggctgcattttgctcttaaatgagtaacagggcTGATTGTTAGCATGGAATTAGCAAATACATGAAATGTGTTTAACTAGCATCCATACTAATGGCATAAggacattaaaaacattcaaatgattaacttaaaattatttttcaaagtGACCTTGCCAGTcgatatcacaatatcatttaaaattaatttttaaaaaaatgaagaacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132864 lncRNA downstream 1442 9964707 ~ 9965338 (-) True G112454
TU132856 lncRNA downstream 2801 9959642 ~ 9963979 (-) False tmsb1
TU132549 lncRNA downstream 260548 9705937 ~ 9706232 (-) True G112161
TU132527 lncRNA downstream 413102 9553026 ~ 9553678 (-) True G112144
TU132524 lncRNA downstream 415728 9550812 ~ 9551052 (-) True G112141
TU132886 lncRNA upstream 30773 10002779 ~ 10002992 (-) True G112473
TU132995 lncRNA upstream 251938 10223944 ~ 10224651 (-) True G112569
XR_004578481.1 lncRNA upstream 262813 10234819 ~ 10241509 (-) True LOC117597733
TU133096 lncRNA upstream 381699 10353705 ~ 10353904 (-) True G112651
TU133142 lncRNA upstream 473643 10445649 ~ 10445952 (-) True G112689
XM_026940603.2 mRNA downstream 2780 9959576 ~ 9964000 (-) True tmsb1
XM_034306159.1 mRNA downstream 20254 9918373 ~ 9946526 (-) False zgc:66447
XM_026940657.2 mRNA downstream 20254 9918373 ~ 9946526 (-) True zgc:66447
XM_034305801.1 mRNA downstream 50020 9905958 ~ 9916760 (-) True znf711
XM_026940551.2 mRNA upstream 9128 9981134 ~ 9992732 (-) True prps1b
XM_026940606.2 mRNA upstream 100165 10072171 ~ 10075615 (-) True rhogd
XM_026940644.2 mRNA upstream 121790 10093796 ~ 10105232 (-) True sybl1
XM_026940573.2 mRNA upstream 148270 10120276 ~ 10130316 (-) True LOC113542803
XM_026940637.2 mRNA upstream 186686 10158692 ~ 10171970 (-) True rraga
XR_003404336.2 other downstream 373455 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 1484717 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 4138222 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 4168844 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 4277941 5687579 ~ 5688839 (-) False zgc:113229
XR_003404347.2 other upstream 1288103 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 1387132 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 1639967 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 1846872 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 2136838 12108844 ~ 12112201 (-) True LOC117597634

Expression Profile