Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578450.1 |
| length | 919 |
| lncRNA type | inter_gene |
| GC content | 0.41 |
| exon number | 5 |
| gene id | LOC113542794 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047601.1 |
| NCBI id | CM018547.1 |
| chromosome length | 30450434 |
| location | 10815748 ~ 10843262 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU133207 | lncRNA | downstream | 329638 | 10495298 ~ 10506943 (-) | True | G112745 |
| TU133144 | lncRNA | downstream | 387619 | 10448655 ~ 10448962 (-) | True | G112691 |
| TU133143 | lncRNA | downstream | 387968 | 10448399 ~ 10448613 (-) | True | G112690 |
| TU133142 | lncRNA | downstream | 390629 | 10445649 ~ 10445952 (-) | True | G112689 |
| TU133096 | lncRNA | downstream | 482677 | 10353705 ~ 10353904 (-) | True | G112651 |
| TU133447 | lncRNA | upstream | 11691 | 10854899 ~ 10856847 (-) | True | G112962 |
| TU133457 | lncRNA | upstream | 13775 | 10856983 ~ 10857542 (-) | True | G112963 |
| TU133458 | lncRNA | upstream | 14432 | 10857640 ~ 10859416 (-) | True | G112964 |
| TU133461 | lncRNA | upstream | 16572 | 10859780 ~ 10859996 (-) | True | G112967 |
| TU133462 | lncRNA | upstream | 18518 | 10861726 ~ 10861943 (-) | True | G112968 |
| XM_026940556.2 | mRNA | downstream | 134618 | 10666316 ~ 10701963 (-) | True | hdx |
| XM_026940558.2 | mRNA | downstream | 153649 | 10666316 ~ 10682932 (-) | False | hdx |
| XM_034306030.1 | mRNA | downstream | 153650 | 10666316 ~ 10682931 (-) | False | hdx |
| XM_026940554.2 | mRNA | downstream | 153651 | 10666316 ~ 10682930 (-) | False | hdx |
| XM_034306031.1 | mRNA | downstream | 158497 | 10666316 ~ 10678084 (-) | False | hdx |
| XM_026940521.2 | mRNA | upstream | 56813 | 10900021 ~ 11041414 (-) | False | LOC113542771 |
| XM_026940520.2 | mRNA | upstream | 56813 | 10900021 ~ 11041414 (-) | True | LOC113542771 |
| XM_026940426.1 | mRNA | upstream | 248489 | 11091697 ~ 11099390 (-) | True | LOC113542731 |
| XM_026940469.2 | mRNA | upstream | 415243 | 11258451 ~ 11325468 (-) | False | LOC113542749 |
| XM_026940466.2 | mRNA | upstream | 415243 | 11258451 ~ 11325468 (-) | False | LOC113542749 |
| XR_003404336.2 | other | downstream | 1243256 | 9587828 ~ 9593325 (-) | False | si:ch211-153b23.4 |
| XR_003404370.1 | other | downstream | 2354518 | 8481995 ~ 8482063 (-) | True | LOC113542950 |
| TU130424 | other | downstream | 5008023 | 5826230 ~ 5828558 (-) | True | G110290 |
| TU130314 | other | downstream | 5038645 | 5793847 ~ 5797936 (-) | True | G110204 |
| TU130235 | other | downstream | 5147742 | 5687579 ~ 5688839 (-) | False | zgc:113229 |
| XR_003404347.2 | other | upstream | 416901 | 11260109 ~ 11325468 (-) | False | LOC113542749 |
| TU133937 | other | upstream | 515930 | 11359138 ~ 11359579 (-) | True | G113398 |
| TU134062 | other | upstream | 768765 | 11611973 ~ 11612569 (-) | True | G113516 |
| TU134224 | other | upstream | 975670 | 11818878 ~ 11858016 (-) | True | G113674 |
| XR_004578392.1 | other | upstream | 1265636 | 12108844 ~ 12112201 (-) | True | LOC117597634 |
