RNA id: TU134264


Basic Information

Item Value
RNA id TU134264
length 2604
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G113712
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 11960139 ~ 11962742 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttttatgtttttttactttgttgtttttttaggtTGTTGTGTTAATGTGCTTGTTTATACTGTTTGGTGaagccaaagacaaatttcTACTTTGTGTACAATAAATGTACCTAATTACATAACTAACtagatgggctacagcagcaggagaccacatcaggttcaactcaatctgaggctgtcatgggcacagacttaccgaaactggacagctgaagactggaaaaagaaaaaaattgggttaaggtctggtgattgacttggccagtctaaaaccttatACTTTTTCCCCCGATGAAGTCCTCTGTTGTGTTGGTAGTGTGTTTTAGGTTATTGTCTTACTGCATGGTGAAGTTCCTCCctattagattggatgcatttctctgtaaattaacaaatagaatgtttctgtagacttgtGAATTCATtatgctgctaccatcatgagttacatcatcaataaagattagtgagctcATTCCAGAAGCATCCATGCAAGCCCaaaccatgacactacctccaccatgtgTGAACGATGAGaacatatgttttggatcatgagcagatcctttctttctccacactttggccttacCATCACTTTAGTAGCAGTTAATCATGGTTCCAAAACTTGTGTGGCTCTTCTcagtatttctttgtgaattccaatctggtctTCCGATTCTTTCTGCTGacgagtggtttgcatcttgttgTATGGCTtgctctgtatttctgtcactgactgttgtttttggctttttcttcacagctctcaacAACTGCTGATAAattgataacttcagtttgatacaagaAATCTACACTTAAAACTCTAaagatgctcatactcaaggtccttttaacacactttgcactgcttgactttatagtatatagttatagaagtgatttataatcacacaatccagtgtcacccaaatgaggatgggtcctcgtttgagtctggttcctctcaaggttttgtGCCACCATtgcttctggcttgctcattagggataaatttaaataaaaattttatatcggtatttctgtaaagctgctttgtggcaatgtccaaTGTTAAAGAGCCTTACAAGTAAAATTTAATTGACTATATGTaaagtgaaattttaaaaattacaccCTGCAATCATGTCAGGTTGAGTTGGAGTGCcactattaaaaaatattgtattttcaaagcTACCATATAATACTTTCGACATAAAGCTGTATAAAGCAGTATGGCACCAATTCAATGTGATTTgtttaaaactgtgtttttgCGCAAATTCCCACAGACTCATTCCAAATTTTAGTGGAAGGCCTTCCTAGAATAGTCAAGGCTGTTCCTGCAGCAAAaaggccaactccatattaatgcccatttGGAagaggatgttcaacaagcacatatgggtatgatagTCATGTGTCCATATAATTTTGGCCATAGTGTTTGTACTGCAGGCAAAATTTGACAATGCTTTCATCTAGACAGAAGATACACAGCAATCTGTTTTCACTGATATACTGCATTTAGAGCAAACTCTATGCAATTACTCCTGTTAGtctgtaaatgtaatgtcaGATAAACAAGTATATTTCCAATGTACAACTACTAAGGGGCAATTTGAGAAAGGCACCACAAATGCATTAGTGCCCCAAATTAACTTATTGTCAGAACGCTAGTTATGTATAgaactgtggttctgtgaacaCTGGATAACTGCCAGAGGTGGTGTTTACACCCCCATATACCTTCTTGTGCATGTGCGCACACATGCCGTGACCTTAGCAAAAAGTCACGTGGTGACCGTATGACGtagcattttaatatataaataacactgGCTATCTGTCCCAGGAATCTTCTTGCCAAGTTCCTGTCTGTTCATCGTTGGTTACATATCACGGGGAATCCTGACAGTTATCCAGTGCTCAATGTTTCTGACCACCTTCTTCCTGGCAACCACTTTGACAAGAAGAGTAGGAGGGCTGTGCGCTTTAGCTATAAGTTTGCCATGCATATGCTGGCGGCCAGATGATGCAGGAGTAACCATGTGGCCAAACGCAGTGTTCCTGCTTAAGGTCATATCACCCACTTTTGTATATCAGTCTGTTGACCTTGCAGCATTCCCTGAAGGGGAACAGGCTAAGCGATCCTCACTATGGCCAGTGTGTGCTTCATGGTACTATGTGAACTGGACAGCAGCAATTTGATCAGTAGAGCAGTTGTTCATCTGTTACAGTGAAAAGACATGTGAAGCCCCCCTGTATAAGCAAAGACTGACCCACTGGGTGGTGGATGCCAACACCTTTGCCTACAGGCAGGCCGATGCCCAGCATGCCACTCTATGAGAAGTGTCCCCTCATCATGAGCAGTGTTCAGAGGTGTGCTGCTCCAGGAGGTCTGTGCCACCTGGGCATCACCATGCACCCTTTCCAGATTCGAGTCATGACATTTCGGTATGGGTTACCAGGTGTTTAAGCACTGCCCCTGTCAGTCaggaggggtgaaatagaacGACATCTGGAATTACGACATGTGTACTGTACTGAACAAAATGATTCATAAAATGGATCATATGAACCTGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134241 lncRNA downstream 62776 11897125 ~ 11897363 (-) True G113691
TU134240 lncRNA downstream 67411 11892521 ~ 11892728 (-) True G113690
TU134182 lncRNA downstream 146348 11813557 ~ 11813791 (-) True G113636
TU134150 lncRNA downstream 202258 11757656 ~ 11757881 (-) True G113604
TU134142 lncRNA downstream 217265 11742661 ~ 11742874 (-) True G113596
TU134267 lncRNA upstream 3285 11966027 ~ 11966734 (-) True G113715
TU134308 lncRNA upstream 44551 12007293 ~ 12007495 (-) True G113756
TU134462 lncRNA upstream 55312 12018054 ~ 12018274 (-) True G113893
TU134458 lncRNA upstream 59256 12021998 ~ 12057353 (-) True G113889
TU134520 lncRNA upstream 206887 12169629 ~ 12174833 (-) False LOC113542864
XM_026940470.2 mRNA downstream 416415 11481891 ~ 11543724 (-) False LOC113542750
XM_026940471.2 mRNA downstream 417033 11481891 ~ 11543106 (-) False LOC113542750
XM_026940472.2 mRNA downstream 429165 11481891 ~ 11530974 (-) True LOC113542750
XM_026940584.2 mRNA downstream 561243 11388502 ~ 11398896 (-) True LOC113542810
XM_026940396.2 mRNA downstream 588946 11368194 ~ 11371193 (-) True asb12b
XM_026940548.2 mRNA upstream 63039 12025781 ~ 12063137 (-) True hdac3
XM_034306017.1 mRNA upstream 63039 12025781 ~ 12063090 (-) False hdac3
XM_034305660.1 mRNA upstream 116782 12079524 ~ 12112216 (-) False LOC117597634
XM_034305661.1 mRNA upstream 146101 12108843 ~ 12112208 (-) False LOC117597634
XM_026940665.2 mRNA upstream 206966 12169708 ~ 12174905 (-) False LOC113542864
TU134224 other downstream 102123 11818878 ~ 11858016 (-) True G113674
TU134062 other downstream 347570 11611973 ~ 11612569 (-) True G113516
TU133937 other downstream 600560 11359138 ~ 11359579 (-) True G113398
XR_003404347.2 other downstream 634671 11260109 ~ 11325468 (-) False LOC113542749
XR_003404336.2 other downstream 2366814 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_004578392.1 other upstream 146102 12108844 ~ 12112201 (-) True LOC117597634
TU134531 other upstream 358589 12321331 ~ 12350528 (-) False G113959
TU134534 other upstream 370014 12332756 ~ 12362272 (-) False G113959
TU134600 other upstream 460986 12423728 ~ 12424057 (-) True G114013
TU134687 other upstream 538229 12500971 ~ 12504801 (-) False timm8a

Expression Profile