RNA id: TU134521



Basic Information


Item Value
RNA id TU134521
length 485
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC113542864
representative True

Chromosome Information


Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12169629 ~ 12174905 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


aagaagaagcagcagcagcagcgaccGACCGACCGACCGACAGACAGGCAGGGCAAGGTGTCTCTTGAAACAGCTCTCTTGATACAATGGGACGTCACTTTGGAGACTTGGCCAAGATAAGACACATAATTACTTACAGCATTTCACCGTTTGAGCAGAGGGCTTTCCCCCACTATTTTTCAAAGGGAATTCCCAATGTTTGGAGAAGATTTACATCATCCATCTTCAAGGTTGCACCTCCCATGATTTTGATGTACCTCACCTACACATGGGGCAATCATGTTCATGAGCAGAGCAAGAGGAAGAATGCTGCAGACTTTGAGAATAACAAGTGAACCAAGTTAATGTCTTTGTCTGTGTTCTGaatatgtaaattttaaataaaaagtatggtaTCAAGTGAAAAGCAGGGTTTgtgactaattttttttattataaattatttttgtccTAAGAGCttgaaattttactttttttaaggGTGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU134458 lncRNA downstream 112276 12021998 ~ 12057353 (-) True G113889
TU134462 lncRNA downstream 151355 12018054 ~ 12018274 (-) True G113893
TU134308 lncRNA downstream 162134 12007293 ~ 12007495 (-) True G113756
TU134267 lncRNA downstream 202895 11966027 ~ 11966734 (-) True G113715
TU134264 lncRNA downstream 206887 11960139 ~ 11962742 (-) True G113712
TU134525 lncRNA upstream 6532 12181365 ~ 12183096 (-) True G113954
TU134554 lncRNA upstream 83382 12258215 ~ 12263170 (-) True G113972
TU134561 lncRNA upstream 103989 12278822 ~ 12283054 (-) True G113979
TU134567 lncRNA upstream 117159 12291992 ~ 12292464 (-) True G113985
TU134530 lncRNA upstream 146498 12321331 ~ 12368943 (-) False G113959
XM_034305660.1 mRNA downstream 57413 12079524 ~ 12112216 (-) False LOC117597634
XM_034305661.1 mRNA downstream 57421 12108843 ~ 12112208 (-) False LOC117597634
XM_026940548.2 mRNA downstream 106492 12025781 ~ 12063137 (-) True hdac3
XM_034306017.1 mRNA downstream 106539 12025781 ~ 12063090 (-) False hdac3
XM_026940471.2 mRNA downstream 626523 11481891 ~ 11543106 (-) False LOC113542750
XM_034306173.1 mRNA upstream 123333 12298166 ~ 12310163 (-) True LOC117597734
XM_034306174.1 mRNA upstream 123333 12298166 ~ 12310159 (-) False LOC117597734
XM_034305794.1 mRNA upstream 263006 12437839 ~ 12492799 (-) False btk
XM_026940674.2 mRNA upstream 263006 12437839 ~ 12492799 (-) False btk
XM_026940667.2 mRNA upstream 263006 12437839 ~ 12492799 (-) False btk
XR_004578392.1 other downstream 57428 12108844 ~ 12112201 (-) True LOC117597634
TU134224 other downstream 311613 11818878 ~ 11858016 (-) True G113674
TU134062 other downstream 557060 11611973 ~ 11612569 (-) True G113516
TU133937 other downstream 810050 11359138 ~ 11359579 (-) True G113398
XR_003404347.2 other downstream 844161 11260109 ~ 11325468 (-) False LOC113542749
TU134531 other upstream 146498 12321331 ~ 12350528 (-) False G113959
TU134534 other upstream 157923 12332756 ~ 12362272 (-) False G113959
TU134600 other upstream 248895 12423728 ~ 12424057 (-) True G114013
TU134687 other upstream 326138 12500971 ~ 12504801 (-) False timm8a
TU134690 other upstream 341525 12516358 ~ 12518194 (-) True G114097

Expression Profile