RNA id: TU134534


Basic Information

Item Value
RNA id TU134534
length 2646
RNA type TUCP
GC content 0.44
exon number 3
gene id G113959
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12321331 ~ 12368943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACATACCTTACACAAGACCTCAACAGGAGTTGACATCTTTTTCTCACTAATCTTCtcatatttctgtttctttgtggCAGCCTGTGTAAAGAGCATGAAAAAGTATGTGATTTGTCACACATTATATGCGTCAtatgtaaatacactcactgtgTGCGTGATCACTTTCTGTGATGTTTAACGTGCGCAAGTTTAAAACCCCTTGCATTGAACTGTGGCCACTGCTGTTAATCAAGGTGCCTTTCAAACTAACCAAGTGCAAAACAAACTCCCACATTAAGTCTAAACaaacttattttatattataaaacagCAACATGTTATAGTAGTGGAGCTGCCTGTTTTGGCTGTGTgagattttgttttttggttattttgtaGTCTCGTGGGGCCAGACATGCACTGTGAACAGCTCCTGAGCATTTCTTTAGCTTACCTTCAGTCCCTGCCAGGGCAAGCTGGTTCTGTTGAAGTACATCAGCACATAGCCTAGAGATTCCATGTCATCTCGACGACTGTTGTTCTATGCCCAAGTGTGCATTGATGCTAGCATAGCGAGCTGTGCCTGTGAGGTTTTTGTCTTCTCTGTAGGGTATGTGCTGTCGTGTCCTGTTGTCCCGGTATTTTTTGGCCAGACCAAAGTCAATGAGGAacaactgcaaaaaataaataaataaataaaataaaaaatcagaacACTGATGTTAAATCAATTTGTCTGCTATACACCCTATACAATTTCACTTGCCACCTTAAGTATAAACAAGAGACACTGGAGGAAGTTTTGGGACTAGTGAACCCTTAAGGGACATGTTCTTGACATGTATAATGATGCTTAAACAAATAAGAAACTGATCATTAAATGAAtgaaccaacaacaacaaaacaaacaaaaaaaacaaataaataaaaacatggaacCTTGAGGGGAATGGGCtgcagcaaaagaccacattgggtcttttcctgttagccaagaacaggaatctgaagctatcatgggcacaagTTAACCCAAACtgtacagttgaagattagagaAAACAAATCACCTGgtcataaatgagcaggtgtacatatgcccctattaaagtggacagtgagagTACAACGAACGAGCTAATGTATTGGTGCCTGATGTCACAGTACACCTTCACAggacttgtggagtccatgccttgacggggCAGAGCTGCTttgcatctcagaatgcattcATACGTCAACTCGCATCACACCTTGAAGCAGAtgggccacaacagcagaagaagacTGTCagattccacttctgtcagccaagaacagaaagctgaggctgcagtgggctcaacaaaactggacagctgaagactggaaaatgtagcctggtctcaTGAATCCCAACTtctgctgagacacacagatggtagggtcagaatttggcaccaacagcataaatccatggacccaacctggcTTGTGGAGGTGGTGAaaggtgtggggaatgttttcttggctaCAGCTACAGCCAGCTGAGTACTGAACATGTGCATCCCCTCATGGCCTCAATTTACCCTTCTCCTAacggctacttccagcatgacaatgcaccatGTCCAATGCAAAAGTTGACAAACTGGTATCATGAACAAGACACCTtcggatgtggtagaacgggaaaAATCTGCAAGAATTGCATGACACAATCAACATGTCAACACGgatcagaatctcaaaggaatgtttccaacattttGTGGAATTCATATCCTGAAGACTTGAAGCTGTTTTGAGAACAAAGGGCTAATAAAGGGCTtggtgtgtgcatgcacacacagatcagccataacattaaaaccactgacaggtgaagtgaataacattgattatcttgttacaatggcacccatcaaggggtgggatattaGGCagtaagtgaacagtcagttctcaaaggtgatgtgttggaagcaggaaaaatgggcaagcataaggatctgagcaactgtgacaagggccagattgtgatggctagacgattGGGTCACAGCAGCTCCAAAagggcaggtcttgtggggtgctcccggtatgcagtggttagtacctaccaaaagtggtccaaggaaggacatcTGGTGAACCTGCAACAGGGTTATTGGCAcacaaggctcactgatgctcacggggagcaaaggctagcccgcCTGGTCCGATCCGacagaagagctactgaagCACAAACTGGTGAAAAAGCTATGATAACTATGATAagcgtcagaacacacagtgcatcgcagcttgctgtgtatggggcggCGTAGCCATAGCCCaatcacctacctaaacattgttgtaaaCCGCTTTACGCAatagtattccctaatggcagtggcctctgccacactgcaaaaattgttcaggaatgatttgaggaacatgacgaaGAGTTCAAGgggttgacttggcctccaaattcctcagatctcaatccaatcgagcatctgtgggatgtactGGACAAATAAGTCAGaaccatggaggccccacctcgcaacttacaggatttaaaggatctgctgctaaagtcttggtgaTGGATACCACAGTCAACGTGACtggatgggtcagagctgtctGGAGTCcgtgcctcgatgggtcagagctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134567 lncRNA downstream 40292 12291992 ~ 12292464 (-) True G113985
TU134561 lncRNA downstream 49702 12278822 ~ 12283054 (-) True G113979
TU134554 lncRNA downstream 69586 12258215 ~ 12263170 (-) True G113972
TU134525 lncRNA downstream 149660 12181365 ~ 12183096 (-) True G113954
TU134521 lncRNA downstream 157923 12169629 ~ 12174833 (-) True LOC113542864
TU134532 lncRNA upstream 527 12362799 ~ 12368943 (-) False G113959
TU134537 lncRNA upstream 15041 12377313 ~ 12377780 (-) True G113961
TU134584 lncRNA upstream 17005 12379277 ~ 12379493 (-) True G114001
XR_004578438.1 lncRNA upstream 138908 12501180 ~ 12503970 (-) True LOC117597691
TU134688 lncRNA upstream 147598 12509870 ~ 12512353 (-) True G114095
XM_034306173.1 mRNA downstream 22593 12298166 ~ 12310163 (-) True LOC117597734
XM_034306174.1 mRNA downstream 22597 12298166 ~ 12310159 (-) False LOC117597734
XM_026940665.2 mRNA downstream 157851 12169708 ~ 12174905 (-) False LOC113542864
XM_026940666.2 mRNA downstream 157859 12169708 ~ 12174897 (-) False LOC113542864
XM_034305660.1 mRNA downstream 220540 12079524 ~ 12112216 (-) False LOC117597634
XM_034305794.1 mRNA upstream 75567 12437839 ~ 12492799 (-) False btk
XM_026940674.2 mRNA upstream 75567 12437839 ~ 12492799 (-) False btk
XM_026940667.2 mRNA upstream 75567 12437839 ~ 12492799 (-) False btk
XM_026940668.2 mRNA upstream 75567 12437839 ~ 12492799 (-) False btk
XM_034305792.1 mRNA upstream 75567 12437839 ~ 12492799 (-) True btk
XR_004578392.1 other downstream 220555 12108844 ~ 12112201 (-) True LOC117597634
TU134224 other downstream 474740 11818878 ~ 11858016 (-) True G113674
TU134062 other downstream 720187 11611973 ~ 11612569 (-) True G113516
TU133937 other downstream 973177 11359138 ~ 11359579 (-) True G113398
XR_003404347.2 other downstream 1007288 11260109 ~ 11325468 (-) False LOC113542749
TU134600 other upstream 61456 12423728 ~ 12424057 (-) True G114013
TU134687 other upstream 138699 12500971 ~ 12504801 (-) False timm8a
TU134690 other upstream 154086 12516358 ~ 12518194 (-) True G114097
TU134829 other upstream 332499 12694771 ~ 12695509 (-) True G114215
TU135100 other upstream 1185240 13547512 ~ 13550775 (-) True G114460

Expression Profile