RNA id: TU134537


Basic Information

Item Value
RNA id TU134537
length 468
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G113961
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12377313 ~ 12377780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ccagctgtagcacgcactattcgaggtaccaacacaTAGCCTGCACCTTTCGATCTGAGTAGgagtggcggatcataaaataccaaaagttcactcaggtactgtggcgcgagaccatttagtgctttataggtcaatagtagttttataatcaatacgaaatttgattaggagccaatgcagtgtggataagataggggtgatatggtcatatcttctgattctagtaaggattcttgctgctgcattctggactaactggagcttgtttatgcatctactggagcatccagacagtaaggcattacaataatccaacctagaggtaacaaaagcatgaactaatttttctgcaccGTGTAGtgatattatatttcttattttagcaatatttctgagatgaaagaaagcaatcctagtgatattatctacatgagcttcaaaagaaagactagagtcgataatcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134530 lncRNA downstream 8370 12321331 ~ 12368943 (-) False G113959
TU134532 lncRNA downstream 8370 12362799 ~ 12368943 (-) False G113959
TU134535 lncRNA downstream 15041 12350680 ~ 12362272 (-) True G113959
TU134567 lncRNA downstream 84849 12291992 ~ 12292464 (-) True G113985
TU134561 lncRNA downstream 94259 12278822 ~ 12283054 (-) True G113979
TU134584 lncRNA upstream 1497 12379277 ~ 12379493 (-) True G114001
XR_004578438.1 lncRNA upstream 123400 12501180 ~ 12503970 (-) True LOC117597691
TU134688 lncRNA upstream 132090 12509870 ~ 12512353 (-) True G114095
TU134689 lncRNA upstream 135049 12512829 ~ 12514622 (-) True G114096
TU134699 lncRNA upstream 140875 12518655 ~ 12522672 (-) True G114103
XM_034306173.1 mRNA downstream 67150 12298166 ~ 12310163 (-) True LOC117597734
XM_034306174.1 mRNA downstream 67154 12298166 ~ 12310159 (-) False LOC117597734
XM_026940665.2 mRNA downstream 202408 12169708 ~ 12174905 (-) False LOC113542864
XM_026940666.2 mRNA downstream 202416 12169708 ~ 12174897 (-) False LOC113542864
XM_034305660.1 mRNA downstream 265097 12079524 ~ 12112216 (-) False LOC117597634
XM_034305794.1 mRNA upstream 60059 12437839 ~ 12492799 (-) False btk
XM_026940674.2 mRNA upstream 60059 12437839 ~ 12492799 (-) False btk
XM_026940667.2 mRNA upstream 60059 12437839 ~ 12492799 (-) False btk
XM_026940668.2 mRNA upstream 60059 12437839 ~ 12492799 (-) False btk
XM_034305792.1 mRNA upstream 60059 12437839 ~ 12492799 (-) True btk
TU134534 other downstream 15041 12332756 ~ 12362272 (-) False G113959
TU134531 other downstream 26785 12321331 ~ 12350528 (-) False G113959
XR_004578392.1 other downstream 265112 12108844 ~ 12112201 (-) True LOC117597634
TU134224 other downstream 519297 11818878 ~ 11858016 (-) True G113674
TU134062 other downstream 764744 11611973 ~ 11612569 (-) True G113516
TU134600 other upstream 45948 12423728 ~ 12424057 (-) True G114013
TU134687 other upstream 123191 12500971 ~ 12504801 (-) False timm8a
TU134690 other upstream 138578 12516358 ~ 12518194 (-) True G114097
TU134829 other upstream 316991 12694771 ~ 12695509 (-) True G114215
TU135100 other upstream 1169732 13547512 ~ 13550775 (-) True G114460

Expression Profile