RNA id: TU134554


Basic Information

Item Value
RNA id TU134554
length 4884
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G113972
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12258215 ~ 12263170 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACCCCCAGTGCAGTAAGCAGGAACTACATCCTCAGTGGGTCAGAGAAGGGGAGCAGTGACATCCTCGCCAGAGCCAGGAGTCGGATTGGACACAAGAGACCTCGTCGGCCTTGGGTGTGGCTTGCGAGGCCTCCTCTTTGTCCTCTGGCTTGGGCATAACTTTGGAGGCTGTCTGGTCAACCTCAGGCTTGTGCTTAGCTAGCGGGGCCTCCCCGTTGGCCTCTGGCTTGAGCAAGTCTTGTGAGGCCACCCCATCATCCTCTGGCTTGAGCGTAGCTTGCGAGACCGCCCCATTGGCCTCTGGCTTGAGTGTGGCTTGCAAGACCATCCCATTGGCCTTCTGGCATGAGCTGGTCTGGAGAGGCCGCTCCATCGGCCTCTGGCATGAGCTAGTCTGGAGAGGCCACCCCGTTGGCCTCTGGCGTGAGCTGGTCTGGAGAGACCTacttgttaatgttaattaatgttaatgtagtCCAGCACCGCTTTCAGTGCTGACATGACATGCCTGTAGGGAGTTCTGGAGCATTTGGAGAATGCTGGCCTTAACAGAGACCACAGGCCTTAACAAATTGCATTCTGAGCCAGAAAAGGCTACATTATCTGGACCAGGGGATCAACACAGCCTGCGCCCTGAATTACAccatatggctaaaagtatatggacacctgatcacAACACCCATATGAGGGccttcccaaactgttgccactactggttccagtgaagggaactaaggggcctaacccaaacctgttccaccatgacaatgcccctgtgcacaaagtgaggtccaaccatggtttgccaaggttcgTATGGAAGAATTTGGGATTgaatgaattggaatgccaactgctccccaggcctgatcacctgacatcagtgacTGACCTCAGTTGTGGCTGAATGGTCAAATCttcacagccatgctccaaaatctagtggaatgcCTTCCCAGAAAGGTGGaggttattttaatgtattatatactgtataaagggggactaaatctggaatgggatgggaagcacatatgagtgttgtgttcaggtgtccacaaacttttgtatgtgtatataaagaGTGAATAGTGTAAATAATGTATCCATACTCAGAAATTACCAAGAACTCAAAGAATCAAGGTCTGGTCACTTATTTGGGGAAATACATGGCCAGTCAAACTGCTAAAATCAAAGTCAGTTTTGTCACAGGGCCCAGCTCAACAGTCTTTAATTTTACAGATCATAGACAACACCTCATGACATCGCGTACTCTGGAATACTACAAATACCGAAAGGATTTGCCTTGGTCACAGGTCATAAACCTTTCACTGATTAACTCCAAGGATCTGCACAATGCATCAGTACAATGCCAAAGGCTACTGATGAGACTGCTGAACGTGTGGTGCTACTGTAATATTGCATCCATTATTGACAGTAAGAGTGCACCACAACATTGAGGTTGCGAATTTTCGTACATACCATCAGGATGGCCAGAGCATATTGGGAAACCACATGCCAGATGCCACATGCCAACCACATGTCAGAGAGTATTCCCAGTCTGAACAAACTAAAGGCCACAGTGCAGAGACAGAGGAAACACTTTTATATGGGGTATACCATAACTCAGATAATGATCCCATCTAGATGCCAGATACCCTAGTAAGTTTAGGGAATAGTCCTCCAGCTCAGAGTAAAAATAGGCCGAAGTACTGACCCAGGCCAGGtaccaaaaaaaatcaagtaggAGACTGGAAAACTACAATCTGTGAGAGTAAGAGGTGACTAGGAGAATGTTGAAACAATCTAATTGAACTGActggtaaaatattttttctaataattAAAGTTTTAGTGGTGCAAGTTTCAGTAATTAATGTTTTAGTGGTTATGATAACACCTGTTTATTTGTTAGCTTAATTTGGAACCTAAAGATagtttgttaatattaaatattatgtaatacCATTAGTCATGAACAAGAAGAAATTTCACTGTACCAAAAAAGGATTGCATGGTGGTTGAATAAGAGCTCTGTAAAGGGGGAGACTGGTTCACATTGGTGCATCTCCATGATGCATACATACTTCCATTTTAGCATTGCTCCACCTTCTGGAGGTTCACCTTCCTGGGACAGGCATTCAAAATTCTCCCTTTATTTCTGTGCCCCTGTGAGACCTTTCTTTATCCAATCTTTTGAAACAAATATATGAAGTATACCAATGGCCCTGGATtgctgtttaaaatatttattcttcCAACATTACAAGTTTGCACACTGATGAATGtgcttcttcctcatgtcaaGGATTTGGTCAAAATGAGTTGTGAGCTTACTCCTAACAGTGGCTAGCATGTAGCGCTCTCATTGCGGTGGCCTGTGTTCGATCCCCAGTCAGGGAACCAACAGCAGCCCCTGGAGGGATGCACGAGCTaatgcactctcagtgccagttCCAAGCCCAgaaaatggggagggttgcgtcaggaacaAACATGAACAAATCATGCCAAACATGAAACCAAATTGGTACTGTTATTTAATTCTCCAGTTCCAtgacgattaaaaaaaaactgtcagatGTTGTAAACTTTGAGAATTATAGGCATTTCAGATGAAGTGATTAATTTGATGGAGGCAGAAATGGTAGCCAATGTCCTGTTCATCAGTAGGCTGTTATGCACACTtatgatcagccataacattaaaaacacttaCAGGTGAattgaataacactgattatttcattacaatggcacctgtcaaggggtgggatatattaggcagcaagtgaacagtcagttctcaaaggtgatgtgttggaagcagaaaaaagtGTAAGAATCTgaatgactttgacaagggccaaattgtgatggctagacaactgggtcagggcatctccaaaacagcaggtcttgtggggtgcttctggtatgcagtggttagtacctaacaaaagtggtccaaggaaggacaaccgctgaaccagtgacagggtcatgagcACCCAAGGTTCATTGATacgtgtggggagcgaaggctagcctgtctggtccaaccccacagaagagctactgtaagttaatgctggctatgataggaAGGTGTCAAAACACGCAGTGCATCGcggcttgctgcatatgggggctgtatagccacagacctgtcagagtgcccatgctgacccctggtATTGGTATTCCCTATTAgaagtggcctctttcagcaggataatgctccctgccatgctgcaaaaattgttcagaaatggggaacatgacaaagggttcaaggtgttgacttggcctccatattccccagatctcaatccgatggagcatctgtgggatgtgctggacaaacaagtccgatccatggaggccccacatCGCAACttgcaggacttaaaggatctgctgctaacatcttggtgccagattggTGGTGAGGAATGAGAGAAGCTTGGTGCCACCACAACACACCTTtacaggtcttgtggagtccatgccttaaCAGGTCAGACCTATTGTAGTGGCACAAGAGGGACCTacataatattaggcaggtgggtttaatgttatggctgatcaatgTATTACcatcaggtccataaatattagGACAGtcacacaattttcataaatttgCCTCTGTAAACCAGCACAATGGATTTGatatgaagcaatcaagatgtgatcgaagtgtagactttcagccttaattcaaggggtttaacaaaaatactgcattaactatttaggaattacagccatttattgcagagtccctccattttaaCAGGCTTAAAAGTAATGGgtcaattgactgataagcggtttcatggccaggtatgacctgtttccttgttatttcatgacaaattaaggagataaaaggtctagagttgattccaagcattgaatttgcatttggtagctgttcatgggaactctctcACTCTAAAGAtgtgtcaatgcaagtgaagaaggccatcattaggctgaaaaaacaaaacagacctatcagagagaacagcagaaactttagaagtggccaaatcaacaatttggtacattcttaaaaagaagtaatgcactggcgagctcagcaacaccaaaaggcctggaagaccacagaagataactaaagtggatgatcgctgAATTGTTTCTTTGTTGAAGTAAAACCCCTTCTAGCCAAATCAAGAACatgcccagttctggaacaagattaacttgtaccagaatgatgggtaGAGAAGAGtatagagaaggaaaggaagggctcatgatccaaagcataccacatcatctgtcaaacatgtggaggcagtggtATGGCATGGCCatatatggctgccaatggaactgggtcactggtgtttattgatgtgactgctaaCAGAAGTAGAAGgatgaatactgaagtgtattgAGCTATAATTTCTGTTCAGACGCagtcaaatgctacaaaactgataggacgatGCTTCATAGTACAGacggataatgacccaaaacatactgcaaaagcaacacaagggcttcttaaggcaaagaaattaaatgttcttaaatgtccaaaTGGACTCatcccaatagagcatgcttttcacttactgaagataaaactgaaggcagaaagacccacaaacaagcagcaactgaaggcagctgcagtaaaggcctggcaaagcatctcaagggcgGAAACTCAaaatttgatgatgtccatgaattccagatttcaggcagtcattgactgtgaaagatttgcatccaagtattaaaaataatcctaacatTTATGAATGTTGTTTGTCCAATTTCTTTTgggcctgtgaaaatggagggactctgcaaaaaaaaaagctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134525 lncRNA downstream 75119 12181365 ~ 12183096 (-) True G113954
TU134520 lncRNA downstream 83382 12169629 ~ 12174833 (-) False LOC113542864
TU134521 lncRNA downstream 83382 12169629 ~ 12174833 (-) True LOC113542864
TU134458 lncRNA downstream 200862 12021998 ~ 12057353 (-) True G113889
TU134462 lncRNA downstream 239941 12018054 ~ 12018274 (-) True G113893
TU134561 lncRNA upstream 15652 12278822 ~ 12283054 (-) True G113979
TU134567 lncRNA upstream 28822 12291992 ~ 12292464 (-) True G113985
TU134530 lncRNA upstream 58161 12321331 ~ 12368943 (-) False G113959
TU134535 lncRNA upstream 87510 12350680 ~ 12362272 (-) True G113959
TU134532 lncRNA upstream 99629 12362799 ~ 12368943 (-) False G113959
XM_026940665.2 mRNA downstream 83310 12169708 ~ 12174905 (-) False LOC113542864
XM_026940666.2 mRNA downstream 83318 12169708 ~ 12174897 (-) False LOC113542864
XM_034305660.1 mRNA downstream 145999 12079524 ~ 12112216 (-) False LOC117597634
XM_034305661.1 mRNA downstream 146007 12108843 ~ 12112208 (-) False LOC117597634
XM_026940548.2 mRNA downstream 195078 12025781 ~ 12063137 (-) True hdac3
XM_034306173.1 mRNA upstream 34996 12298166 ~ 12310163 (-) True LOC117597734
XM_034306174.1 mRNA upstream 34996 12298166 ~ 12310159 (-) False LOC117597734
XM_034305794.1 mRNA upstream 174669 12437839 ~ 12492799 (-) False btk
XM_026940674.2 mRNA upstream 174669 12437839 ~ 12492799 (-) False btk
XM_026940667.2 mRNA upstream 174669 12437839 ~ 12492799 (-) False btk
XR_004578392.1 other downstream 146014 12108844 ~ 12112201 (-) True LOC117597634
TU134224 other downstream 400199 11818878 ~ 11858016 (-) True G113674
TU134062 other downstream 645646 11611973 ~ 11612569 (-) True G113516
TU133937 other downstream 898636 11359138 ~ 11359579 (-) True G113398
XR_003404347.2 other downstream 932747 11260109 ~ 11325468 (-) False LOC113542749
TU134531 other upstream 58161 12321331 ~ 12350528 (-) False G113959
TU134534 other upstream 69586 12332756 ~ 12362272 (-) False G113959
TU134600 other upstream 160558 12423728 ~ 12424057 (-) True G114013
TU134687 other upstream 237801 12500971 ~ 12504801 (-) False timm8a
TU134690 other upstream 253188 12516358 ~ 12518194 (-) True G114097

Expression Profile