RNA id: TU134584



Basic Information


Item Value
RNA id TU134584
length 217
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G114001
representative True

Chromosome Information


Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12379277 ~ 12379493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CCTGCATATAATATTTTGATGACTTAAAAGGCAATTTAAAGGGGTCAAAATCACACCTTAAGAGAAAATTAATTTCTACTACCATTTGAAAAAGATAAGACAGGACATTAAACCATAAACATTGTTCATATATTACAAAAGACTGTAACCATCTTAATAACTCCATTCATTACTTCAAAATCAGTTATATTCATACCCACCTTCTTCTACTGATTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU134537 lncRNA downstream 1497 12377313 ~ 12377780 (-) True G113961
TU134530 lncRNA downstream 10334 12321331 ~ 12368943 (-) False G113959
TU134532 lncRNA downstream 10334 12362799 ~ 12368943 (-) False G113959
TU134535 lncRNA downstream 17005 12350680 ~ 12362272 (-) True G113959
TU134567 lncRNA downstream 86813 12291992 ~ 12292464 (-) True G113985
XR_004578438.1 lncRNA upstream 121687 12501180 ~ 12503970 (-) True LOC117597691
TU134688 lncRNA upstream 130377 12509870 ~ 12512353 (-) True G114095
TU134689 lncRNA upstream 133336 12512829 ~ 12514622 (-) True G114096
TU134699 lncRNA upstream 139162 12518655 ~ 12522672 (-) True G114103
TU134774 lncRNA upstream 185255 12564748 ~ 12564968 (-) True G114169
XM_034306173.1 mRNA downstream 69114 12298166 ~ 12310163 (-) True LOC117597734
XM_034306174.1 mRNA downstream 69118 12298166 ~ 12310159 (-) False LOC117597734
XM_026940665.2 mRNA downstream 204372 12169708 ~ 12174905 (-) False LOC113542864
XM_026940666.2 mRNA downstream 204380 12169708 ~ 12174897 (-) False LOC113542864
XM_034305660.1 mRNA downstream 267061 12079524 ~ 12112216 (-) False LOC117597634
XM_034305794.1 mRNA upstream 58346 12437839 ~ 12492799 (-) False btk
XM_026940674.2 mRNA upstream 58346 12437839 ~ 12492799 (-) False btk
XM_026940667.2 mRNA upstream 58346 12437839 ~ 12492799 (-) False btk
XM_026940668.2 mRNA upstream 58346 12437839 ~ 12492799 (-) False btk
XM_034305792.1 mRNA upstream 58346 12437839 ~ 12492799 (-) True btk
TU134534 other downstream 17005 12332756 ~ 12362272 (-) False G113959
TU134531 other downstream 28749 12321331 ~ 12350528 (-) False G113959
XR_004578392.1 other downstream 267076 12108844 ~ 12112201 (-) True LOC117597634
TU134224 other downstream 521261 11818878 ~ 11858016 (-) True G113674
TU134062 other downstream 766708 11611973 ~ 11612569 (-) True G113516
TU134600 other upstream 44235 12423728 ~ 12424057 (-) True G114013
TU134687 other upstream 121478 12500971 ~ 12504801 (-) False timm8a
TU134690 other upstream 136865 12516358 ~ 12518194 (-) True G114097
TU134829 other upstream 315278 12694771 ~ 12695509 (-) True G114215
TU135100 other upstream 1168019 13547512 ~ 13550775 (-) True G114460

Expression Profile