RNA id: TU134689


Basic Information

Item Value
RNA id TU134689
length 1794
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G114096
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12512829 ~ 12514622 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaaattttgttattttgatttgtttacagCATTCTCAAATGTGCCCACTTTCTGCAGAATATGCCAGTTGTTACTGACAAATTGGCATCATAATTTAGCACAATGCTAACTCTCTATCAGGCTATGCTAACAGCAAATCAGTGGAATTTTAATTACAACTCACTTGATGCTACAACAGATTGAACCTAATAATATTATTTGTTGATAATCGATATGTTCTACACACAGTAACTGTACTAGAGTAGTCTTTAATAATTGTTCAGATTTAGGCTATCTGCCAGCAAGCTAACTCTTATGTTACTTGAGGTGATAATGGTCTACATTTCCTTGCATAAGTAACAGCAGACCTGTTTTTTGCTATAAGCTGTCGCTTAGGGCCCCTGGACCACCAGGGGGccccatgatttttaaaatatacaaaaaagcACCATTAACTATCATTTGGCTAAAAGATTTATGTGTGTGGCAGTCACAGGGAGCTCCCTTGCAGTGTTAAAAGAACAGAAACTACAATTTACGTAACTAAATTAGGTAACCGGCATAACTAATATCAGAAGGTCATTAAGAAACAGTGATTGTGAAGTGTTCATATCTGGGgtggaaaaatgcaaaaaagaaaatccagaatAGGAGAAACATTGCCAAAGCACCAGTAAGTAATGAACACTAATTAACTTCCTATTTCTTGCTTCCAGTTGCTGATGTAATTAAAATGGATAAAGTTAGCTAACTATCTAAAGCTAACTATCTAGTATCTAGTGTAAGAAGTGTTAGGCTAATGAACGTTAAGTTGCTACAATAGAAGCTTGTTGACTTTAAAGATAAGCACCACTCAGGTGGTTGAAACGTCAATCATCCTACAGTTCTTTCTGGAATTATAGCAACTTAGACACTCGCAGCCAATGAAGAAATTATTTTCCTTGTTTCAATACCTTTACCTAAGTAGCCACTGTCAGGAATGCAAATGCAGGTTTTATTGAAgaacacaacagcaaagggCTGTTGTGCTGCTGGGAAATTCAATGAGGGTATTTTTTTGTGGCATGGAATTCTGGGAGTTACGAAAGCAGGTGAAATGAGAATAATTTTTCAAGTcctatttaagcaatatcacataagcaagagtgcggttatacagAATATTGGCACGGCTGTGCTTCGAATGAAGCAGGCACAAGCCCGCAGGCCACGTGCTGTAGgtaatattgcttttatacaacagttctataaattaattaattgtaattaataGTGACATTTAGTACACAATATGCCCAAATGTTTCGTTTATTTTGCTCCTCTAGCGGAAATAGATTttgaagaagccacactcactttataacATGTCGGCTAGCTCACTAGCTAGATCatattgatttgtacattcccattaaaggtgtTTCCAGTAAAATTTGCGTCCCTTCTTCTTTTGCATCTTCAACTGACGAGCTTTCATAAGCCAAAGGTTGTATACCTGAAAAGTATTGTTTATCAGGTCAAAAGCCTGTTGATGATGTCGCCAACACTACTGTACTAACGGTTTCGAACTAGCAAGTTTCGACGAGCGGAATAATACAAacagtgtggttataggaaatatagtcactcttggaatgctgctcaaccaatcaaattagtggaccagaatcAACTGTtgaataataagaaatatttttgggTGTCGTCAGGGTTTGAACTAACTGAAATGGTACATTTTTAAGCTAAATTCAGCTTGACGGGTttgcttaattaaaaaaaaaaaaagaagcataaaTTTTagtgtttgcatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134688 lncRNA downstream 476 12509870 ~ 12512353 (-) True G114095
XR_004578438.1 lncRNA downstream 8859 12501180 ~ 12503970 (-) True LOC117597691
TU134584 lncRNA downstream 133336 12379277 ~ 12379493 (-) True G114001
TU134537 lncRNA downstream 135049 12377313 ~ 12377780 (-) True G113961
TU134532 lncRNA downstream 143886 12362799 ~ 12368943 (-) False G113959
TU134699 lncRNA upstream 4033 12518655 ~ 12522672 (-) True G114103
TU134774 lncRNA upstream 50126 12564748 ~ 12564968 (-) True G114169
TU134781 lncRNA upstream 57725 12572347 ~ 12589625 (-) True G114176
TU134788 lncRNA upstream 150132 12664754 ~ 12665071 (-) True G114183
XR_004578426.1 lncRNA upstream 162346 12676968 ~ 12689365 (-) False LOC117597685
XM_026940609.2 mRNA downstream 8019 12500940 ~ 12504810 (-) True timm8a
XM_034305792.1 mRNA downstream 20030 12437839 ~ 12492799 (-) True btk
XM_026940795.2 mRNA upstream 12869 12527491 ~ 12549282 (-) False atoh8
XM_026940794.2 mRNA upstream 18016 12532638 ~ 12549281 (-) True atoh8
XM_034305621.1 mRNA upstream 21063 12535685 ~ 12549293 (-) False atoh8
XM_026940457.2 mRNA upstream 66834 12581456 ~ 12662949 (-) False spdl1
XM_034305918.1 mRNA upstream 66835 12581457 ~ 12662947 (-) False spdl1
TU134687 other downstream 8028 12500971 ~ 12504801 (-) False timm8a
TU134600 other downstream 88772 12423728 ~ 12424057 (-) True G114013
TU134534 other downstream 150557 12332756 ~ 12362272 (-) False G113959
TU134531 other downstream 162301 12321331 ~ 12350528 (-) False G113959
XR_004578392.1 other downstream 400628 12108844 ~ 12112201 (-) True LOC117597634
TU134690 other upstream 1736 12516358 ~ 12518194 (-) True G114097
TU134829 other upstream 180149 12694771 ~ 12695509 (-) True G114215
TU135100 other upstream 1032890 13547512 ~ 13550775 (-) True G114460
trnae-uuc_1 other upstream 1694294 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135547 other upstream 1705694 14220316 ~ 14221855 (-) True G114873

Expression Profile