RNA id: TU134690


Basic Information

Item Value
RNA id TU134690
length 1837
RNA type TUCP
GC content 0.37
exon number 1
gene id G114097
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12516358 ~ 12518194 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcaccacggttgtaaatagtgcttatttgagttactaaagacttcctgtcagctcaaactagtctgAACAATCTCCTCtgatctttctcatcaacaagctgtttcagtctgcagaccctctgcacatGGGATGtgaccattctgtgtaaactgttgagtgtgaaaatcccaggagagcaatagtttctgaaatagtaaatccagcccgtctggcaccaaaaTCCCTGCCATGATTAAAGTCAAAGAGatgacactttttcttcattctgttgtttgatgtgaaaattaactggagctcttgacatgtatctgcatgattttttttttgcattgcactgctgccacatgattggctgattagataattgtatgaatgtgcaggtgaacaggtgttcctaataaagtggacgagAATGTATTTTTGCTGATGAAATCTATAAGCAATCTATTATTTCTAATATCTATTTATTAGTTGGTCTTTTTTCACTGAAAggagtgttcacatcaaatttCAGACCTGGCCCAATCATAATCTGGTCAACAGAGTGGTTTAAATTTTTGGTTATGTTGATAATGTTACGTCGATTGAATTCATGGTGTTTAGTGGACAGAAAACAGTTGAAATCCTTGACTGTATGTTTGCAAGTTTGAATATTAGACATACAGTGAATTAATATATGAccatttcaacacatttaggATCTGTTTCAAGCTGATTCATCAACAGCTAGATGGGGCTTCAGAGAAAACTTGCACTTTTGCTAATGTTACATGGACAGAATTTTACGTAACATTAGCAACACATCAGCTTGGCAAGAGCCTGCGACCCATTTCAGCACTACCAAACTAAAAGAATAacatatttcaaaacaaaatatatatatatatatatatatatatagacatatagaCATCGAAACATTCAGTGTCCAATTTTACCTTCTAATGGTTACAATTTATAGAAAATGTGATGTGTTGCTAATGTTACATGGACAGAACTTCatgttgaatgttgaatgtCTGACTGATTTTTGCATTAGAAACCCAGGGCCATGTTTAGTTGCATACCTTTTTTTGTGGGAGATTGTCCCTTATGTCCTCCTATTTGTAGAATTCTTGTATGCAATTTTCaggttttacacattttttcagtTTCCTTTTGCATGGATTGAACCATTTCAGACTGGACAAGGCACCTGCCAACTTTGATAACTAACTTCTTTGCAATTTCCTTGACAAGTTTTCTACCAGCCAAAGTTGACTTCACTGCAAGAATGGCTTCCTTTGCCTCAGCAGAAAACAGTTTCTTTCTATGTGGTTCTGCAGAATGAGTGGACTCTAATAATTTGCACTTCCTGGGACTGTGCATGCTATTCTTCACAAGCCTGGACACAAAATGCATACATACAACATGTTTTTCAGGATCCTTCGGTAGGGATCCCCTAACTTTAGTAACTGCATTATACTGGGTCTTTTTACATGCAAAACCAGTTGATGGGGTAGTCTCAAATTTTTCcaacttctttttttgtttagcttctctgttttttttttttttttttttttttggtggctCAGGTTACGCCAAACCTCTCTCTGTGCATTCACAACCAAACGAGTTTTCACCTTTGGAGTGGGAATTAGGAGTACCATTTTCAATCTGCTTCAGCCGGAATCTCCTCTGCCAAAGGCGAACTTGTTCTTTTTCTTGTGCTGCTCCTTTGCTGCTGCCACTGGCCTTTTCTTCTGCAAGTTCTCCTTTAATTaatctcttttttgttttgctctttgcttttgtttattgAGATATTCTTAGTATCTTTTGgatcttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134689 lncRNA downstream 1736 12512829 ~ 12514622 (-) True G114096
TU134688 lncRNA downstream 4005 12509870 ~ 12512353 (-) True G114095
XR_004578438.1 lncRNA downstream 12388 12501180 ~ 12503970 (-) True LOC117597691
TU134584 lncRNA downstream 136865 12379277 ~ 12379493 (-) True G114001
TU134537 lncRNA downstream 138578 12377313 ~ 12377780 (-) True G113961
TU134699 lncRNA upstream 461 12518655 ~ 12522672 (-) True G114103
TU134774 lncRNA upstream 46554 12564748 ~ 12564968 (-) True G114169
TU134781 lncRNA upstream 54153 12572347 ~ 12589625 (-) True G114176
TU134788 lncRNA upstream 146560 12664754 ~ 12665071 (-) True G114183
XR_004578426.1 lncRNA upstream 158774 12676968 ~ 12689365 (-) False LOC117597685
XM_026940609.2 mRNA downstream 11548 12500940 ~ 12504810 (-) True timm8a
XM_034305794.1 mRNA downstream 23559 12437839 ~ 12492799 (-) False btk
XM_026940795.2 mRNA upstream 9297 12527491 ~ 12549282 (-) False atoh8
XM_026940794.2 mRNA upstream 14444 12532638 ~ 12549281 (-) True atoh8
XM_034305621.1 mRNA upstream 17491 12535685 ~ 12549293 (-) False atoh8
XM_026940457.2 mRNA upstream 63262 12581456 ~ 12662949 (-) False spdl1
XM_034305918.1 mRNA upstream 63263 12581457 ~ 12662947 (-) False spdl1
TU134687 other downstream 11557 12500971 ~ 12504801 (-) False timm8a
TU134600 other downstream 92301 12423728 ~ 12424057 (-) True G114013
TU134534 other downstream 154086 12332756 ~ 12362272 (-) False G113959
TU134531 other downstream 165830 12321331 ~ 12350528 (-) False G113959
XR_004578392.1 other downstream 404157 12108844 ~ 12112201 (-) True LOC117597634
TU134829 other upstream 176577 12694771 ~ 12695509 (-) True G114215
TU135100 other upstream 1029318 13547512 ~ 13550775 (-) True G114460
trnae-uuc_1 other upstream 1690722 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135547 other upstream 1702122 14220316 ~ 14221855 (-) True G114873
trnav-uac other upstream 1950359 14468553 ~ 14468625 (-) True trnav-uac

Expression Profile