RNA id: TU134781


Basic Information

Item Value
RNA id TU134781
length 608
lncRNA type sense_over
GC content 0.51
exon number 2
gene id G114176
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12572347 ~ 12589625 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtcgcgtattcctccaagtcagtgaagtcgccgtcagttgccgcttccctgaacatgtgccagtcagtgtgttcaaagcagtcctgaagagcagagatggctcttgctggccaggttttcacctgcttcagaaccggtttggagcgtctgactagcggtctgtatgctgggattagcataacagagatgtggtctgagtagccgaggtgggggcggggctccacCCGGTACgcgccggggatgtttgtgtaaacaaggtccagcacatttttccctctcgttgcaaagtccacatgctgatggaatttagggagcactgacttgagatttgcatggttgaaatctctggcaacaataaacagtctgtcagggtgtgaattctgcagctcgctaatagccccatacagttcacagagcgccTCCTTAGCATTGGCGTTAGCACTGGCGGGAATGTAGACACCGATTATGAAAACCGtagtgaattcccgtggtaaataaaaaggtctacatctaacagtcacaaactccaccagcgatgagcagtaactagaaactagcaccgagttcttgcaccattccgtgttgatgtaaacacacaagccgccGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134774 lncRNA downstream 7379 12564748 ~ 12564968 (-) True G114169
TU134699 lncRNA downstream 49675 12518655 ~ 12522672 (-) True G114103
TU134689 lncRNA downstream 57725 12512829 ~ 12514622 (-) True G114096
TU134688 lncRNA downstream 59994 12509870 ~ 12512353 (-) True G114095
XR_004578438.1 lncRNA downstream 68377 12501180 ~ 12503970 (-) True LOC117597691
TU134788 lncRNA upstream 75129 12664754 ~ 12665071 (-) True G114183
XR_004578426.1 lncRNA upstream 87343 12676968 ~ 12689365 (-) False LOC117597685
XR_004578431.1 lncRNA upstream 88220 12677845 ~ 12689354 (-) True LOC117597685
TU134826 lncRNA upstream 88527 12678152 ~ 12691407 (-) False LOC117597685
XR_004578428.1 lncRNA upstream 89241 12678866 ~ 12691185 (-) False LOC117597685
XM_034305621.1 mRNA downstream 23054 12535685 ~ 12549293 (-) False atoh8
XM_026940795.2 mRNA downstream 23065 12527491 ~ 12549282 (-) False atoh8
XM_026940794.2 mRNA downstream 23066 12532638 ~ 12549281 (-) True atoh8
XM_026940609.2 mRNA downstream 67537 12500940 ~ 12504810 (-) True timm8a
XM_026940671.2 mRNA downstream 80697 12437839 ~ 12491650 (-) False btk
XM_026917900.2 mRNA upstream 272025 12861650 ~ 12904853 (-) True hspa9
XM_026917725.2 mRNA upstream 344932 12934557 ~ 13027955 (-) True fbxo38
XM_026917724.2 mRNA upstream 344932 12934557 ~ 13010114 (-) False fbxo38
XM_034305916.1 mRNA upstream 344932 12934557 ~ 13010114 (-) False fbxo38
XM_026917723.2 mRNA upstream 344932 12934557 ~ 13010113 (-) False fbxo38
TU134690 other downstream 54153 12516358 ~ 12518194 (-) True G114097
TU134687 other downstream 67546 12500971 ~ 12504801 (-) False timm8a
TU134600 other downstream 148290 12423728 ~ 12424057 (-) True G114013
TU134534 other downstream 210075 12332756 ~ 12362272 (-) False G113959
TU134531 other downstream 221819 12321331 ~ 12350528 (-) False G113959
TU134829 other upstream 105146 12694771 ~ 12695509 (-) True G114215
TU135100 other upstream 957887 13547512 ~ 13550775 (-) True G114460
trnae-uuc_1 other upstream 1619291 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135547 other upstream 1630691 14220316 ~ 14221855 (-) True G114873
trnav-uac other upstream 1878928 14468553 ~ 14468625 (-) True trnav-uac

Expression Profile