RNA id: XR_004578431.1


Basic Information

Item Value
RNA id XR_004578431.1
length 2784
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id LOC117597685
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12676968 ~ 12691407 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttattacacatcttttgataattttatgataattcctaaatatgatccaacatacaaaaaatacagttttacgtTATAGTATTACTGACTGAGGTACTGAGCCGGGAAGTGGTCACGTGACAAAAGAACGAACGACTCGAAAGATtcgagagatgaactaatcaattctctttccggcTCAGGCTGCATTGGTTAAGCTTATGGGGCTGTCATGTGATGAACGAACGACTCAGACCCGAAGACTTGTCAGCAACAGTGCAACCACATTGTTGCGCTACTGTACCAAGCAGCATGCTACTCTCAGCTTGGCGTCAGTGCAGTTCCTCCAGTTCACAGCTGTACTGAAACTGAGCAGAGCTAGCACAAACCCAGAACAATGAGAGGTTTGCCATGTACGGGGGTCAGAGCTCCGCTGAACACTTGGCTGAAAGGATCTACAAAAGAACTTGCCAGACAGCAGACATGAAGAGAGGCCTTGAAATGGAATCTGCAGCGGTTGAGGAATACTGTCTGTTGCGCACAGTGAACTTCAATCCTTGTGGATTCTTAATTCACCCAGATGTACCTTGGCTTGGTGCCTCTCCTGATGGCATCATATATGACCCCACGGAGCACCAAACTTTTGGCCTTTTGGAGATAAAGTGCCCAAATGTAAAAAAGTTATGTTGATTACCCTTACCTGAAGTTGCAGAATGGCACACCAGAGCTGGAACAACAGCATGCATACTACTGGCAAGTTTCAGGTCAGATGCTGATCTAAGGATTGGACTGGTGTGATTTTTGTTGTATATGCACAGGATGATATGATGAACCAGCACATCTACAAAGACAGCAGAGTGTTTAAAACTATTAGAGAGAGGGCTGAccatttctttttgtatttctaCCTGCCAAGATCTctagaaatgtaaataattacaaGTTGTTTTACACTGTaacaaagttatttatttacatttttacagaaacactgtaaggttatttatatttagatgttTACATTACAGTGGTGTTAAGACAATGCTTTATAAAGTTATTTGTTAACTGAAATGCTATCAAAGCAAGTGTTTTGCCTAGTCTTTAATCCTTTACCCATGCGTTTACCAAGAAGCCAACTGGTAGTTCACAAGGAGGCAAGCAACAGTGTATAGCTGGTTTACGCTCCCGGTGATTGAGAGAGGGATGACTGATTAAAACAGCTTGTGTTGCTTCACCCCGCGTATGAAACACTCAGTGTGGACCCTCAGCTGAGCAATGGATTGAGTCTCCCTTACCTCAACAGCCAACATTTGTTCCCTCTTTGACAGGTAAGCAGGTCTGTCAACTTTGCATGGCACACAATCATACACCAGAAAACCTTTGTTGACCATAATGGCCATTCCAGGTTTCAGCAGAGACACAATCCCAGACTGCTTCAAAAGCTCCTTGCCACTAACAGATCCTGCGTACAGGGATGACACAAATGTGACTGCACCATGTGGTGCCATACCGATTAACCCCTTGAAGGTGCAATGGGACCTTTATCGTGTGAGCCTTGACCGCCTCCTCAGACATCCAGATGAGCACCGATTCAAGAATGGCATACAGAAAATTGGCCCAGGTTGTAATAATGCGACTCACGGTAGACTGATGGATATTGAATCTAAGCCAGATCCCTCTGTGTTAGACCAACAGAGAGATGGACCATGAAGAGGAAAAACTCATCTATTGGCTGCAGGGACTGACCCtgACTCTACAAATAAATCCAAACTGATCCATCCCCCAACAGCCTAGCCTAGTCTTTAATCCTTTACCCATGCGTTTACCAAGAAGCCAACTGGTAGTTCACAAGGAGGCAAGCAACAGTGTATAGCTGGTTTATGCTCCCGGTCATTGAGAGAGGGATGACTGATtcaaatacataataaaattaTGATGCATTGCCTGATGCTCCAACTTCACTCCGTGTTGTAGCTGCCCTTGCTCTGGTCACATGAACCATGTTGTGGGATGCAGGCTCAACAAGTCTGCAGAACGCCATCAAGTGGTTGTAAGTCACAAACCTATATTAGATCTGGGACATGTTTGAGATAATATACACCACCAAATGTGATGCATAGTCAACAGTTGTAGCTTATTTTTTGTTTAGACTGTATTGCAGGTTAAAGTGTAGGGCTTTACTGACATGTAAATAAAAGctctatttaaataaacatgtattaaGACGAGAAGATTAGTTTTTCGCAATCAGACGACCAAGGCTACAATGtgtttcataatataatatcttGTATAAGTTTTAGATCTTACCTAGTGTAAAACCATATGTCATCGTCCAATGCAGCAAATCGCCAAACAAAATCTCTGATGGATAGACAACTCTTCTATCTGTCTCCTCAGGTGCTCCACCTCCTTTCGGAGATCTTCAGTCTGATCTAAAGCAAGATCAAATCCTTTGCTTGTTGGGCAAATATCACATCCACAAATCCACAGTGACATCTTTGAAAactaattttactttattttgctttgagATAAAAGGTTTTGCTGATTCTCCGTGTAAattacaaagaaacaaaaaagccaTTAAAATGTCTCAGGCTTTAAATAAGATCACAGCATCCATTATAAATGGAGACAATACTTTAGATCAGAGTTTAgaaaaagagttttaaaaaaccTTCTTGTCATCCCTTGAACTTATGTTACATTACTCTATGTACGTATATTGTCTCATTGTTATACAATGTGGTATGTTTTGTAAgcattcaattaaattaaaataaaaaaaaaaagaacagatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134788 lncRNA downstream 12774 12664754 ~ 12665071 (-) True G114183
TU134781 lncRNA downstream 88220 12572347 ~ 12589625 (-) True G114176
TU134774 lncRNA downstream 112877 12564748 ~ 12564968 (-) True G114169
TU134699 lncRNA downstream 155173 12518655 ~ 12522672 (-) True G114103
TU134689 lncRNA downstream 163223 12512829 ~ 12514622 (-) True G114096
TU134830 lncRNA upstream 6499 12695853 ~ 12696081 (-) True G114216
TU134840 lncRNA upstream 55118 12744472 ~ 12744681 (-) True G114226
TU134841 lncRNA upstream 55462 12744816 ~ 12745035 (-) True G114227
TU134842 lncRNA upstream 55781 12745135 ~ 12745387 (-) True G114228
XR_003404333.2 lncRNA upstream 56628 12745982 ~ 12755475 (-) True LOC113542678
XM_026940457.2 mRNA downstream 14896 12581456 ~ 12662949 (-) False spdl1
XM_034305918.1 mRNA downstream 14898 12581457 ~ 12662947 (-) False spdl1
XM_026940454.2 mRNA downstream 14899 12581457 ~ 12662946 (-) False spdl1
XM_026940455.2 mRNA downstream 14899 12581457 ~ 12662946 (-) True spdl1
XM_034305621.1 mRNA downstream 128552 12535685 ~ 12549293 (-) False atoh8
XM_026917900.2 mRNA upstream 172296 12861650 ~ 12904853 (-) True hspa9
XM_026917725.2 mRNA upstream 245203 12934557 ~ 13027955 (-) True fbxo38
XM_026917724.2 mRNA upstream 245203 12934557 ~ 13010114 (-) False fbxo38
XM_034305916.1 mRNA upstream 245203 12934557 ~ 13010114 (-) False fbxo38
XM_026917723.2 mRNA upstream 245203 12934557 ~ 13010113 (-) False fbxo38
TU134690 other downstream 159651 12516358 ~ 12518194 (-) True G114097
TU134687 other downstream 173044 12500971 ~ 12504801 (-) False timm8a
TU134600 other downstream 253788 12423728 ~ 12424057 (-) True G114013
TU134534 other downstream 315573 12332756 ~ 12362272 (-) False G113959
TU134531 other downstream 327317 12321331 ~ 12350528 (-) False G113959
TU134829 other upstream 5417 12694771 ~ 12695509 (-) True G114215
TU135100 other upstream 858158 13547512 ~ 13550775 (-) True G114460
trnae-uuc_1 other upstream 1519562 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135547 other upstream 1530962 14220316 ~ 14221855 (-) True G114873
trnav-uac other upstream 1779199 14468553 ~ 14468625 (-) True trnav-uac

Expression Profile