RNA id: TU135356


Basic Information

Item Value
RNA id TU135356
length 1035
lncRNA type sense_over
GC content 0.32
exon number 1
gene id pcdh19
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13841619 ~ 13915588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGGACTAGGATAGAAGGGGTCGTCACTCATGTCTTGCTTGTGAAACTCTGTATTGGGTTTACtatgatcatttttaataaccTGTTGTTATGTGACAATCCCTTTAATGTTTTGTTGCaagagtaaaaacaaaaaaataaataaacaaacactggTGTTCAACTAAAGCTACAGTAGCATttgttacacaaacacaaaaaagaaagaattgtgaaaatatattttataaataatttaaaaatatataatgaaaatatttaattctgttgttgttcttttatcAGCCAAGATACAGCTGAAATTAACAggcttttttaaatgactgattACTTTTGTTTTCAACTGATCTTAGATTTCTGTTTAATGTGTTACCCCTGGTAACTGTTTATTTCAGTCTTCTTGTAAAAAGTTTCTTACTGGTCAGTTCTTGTGCCATTAAGTTTCTGTGTTGGCAAAATGCAgggaaaagacaaaaaaaataaatgtcagcACCAACAGTAGTGTGTCAGTACAAGGGGCTTAGAGTGATATaggaaaagaaacattaaaaagaaataaataatccagGCAAACATTAATATCACAAGTTAACAGATTGTTGCTCATGGTTAAAATTTAAGTCAGGACAAGGATCACACTTGTTTCTGAAGTAAGGAAAGGTACTCGACTCGTTTGTGAAGCACTGTTTGAGGCACTCGATATATTCTGTGGGTAATAGCTTTATGTAGCTTTCTGTAGCTACATGCGTCTGAATAGATTTGAAAAGCATTCCAGTTATGACTAGCACAGTGATGTCAGTATGTATATTGTTGACAGGACTACATAGATTACATGGAAATGTTGGTATGAGGAATGGAAGGTCATATAATTCAAGATTTGAAAACTGACTGTGTTAAGATAGTCAGATGgttaaaatgcaaatgatatAGATCCTGtacctgaatgtttttttctggtcTCACCAACAGTGTCTGGCAACATAAAAACTGAATTATCACTGAATGTACACTgcagattattattaaacttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135176 lncRNA downstream 162111 13679307 ~ 13679518 (-) True G114534
TU135171 lncRNA downstream 170139 13671256 ~ 13671490 (-) True G114529
TU135116 lncRNA downstream 257886 13583507 ~ 13583743 (-) True G114476
TU135099 lncRNA downstream 303855 13537546 ~ 13537774 (-) True G114459
TU135098 lncRNA downstream 304102 13537226 ~ 13537527 (-) True G114458
TU135363 lncRNA upstream 66305 13908968 ~ 13909921 (-) True G114707
TU135385 lncRNA upstream 133062 13975725 ~ 13975926 (-) True G114729
TU135395 lncRNA upstream 145907 13988570 ~ 13988810 (-) True G114739
TU135417 lncRNA upstream 191979 14034642 ~ 14034895 (-) True G114761
TU135784 lncRNA upstream 625587 14468250 ~ 14474465 (-) True G115100
XM_026918593.2 mRNA downstream 778197 13062338 ~ 13063432 (-) True LOC113529411
XM_026917728.2 mRNA downstream 831513 12944152 ~ 13010116 (-) False fbxo38
XM_026917724.2 mRNA downstream 831515 12934557 ~ 13010114 (-) False fbxo38
XM_034306105.1 mRNA upstream 22377 13865040 ~ 13915588 (-) False pcdh19
XM_034306106.1 mRNA upstream 22388 13865051 ~ 13915588 (-) False pcdh19
XM_026917664.2 mRNA upstream 29114 13871777 ~ 13915588 (-) False pcdh19
XM_026917810.2 mRNA upstream 326172 14168835 ~ 14208465 (-) True elf1
XM_026917812.2 mRNA upstream 326172 14168835 ~ 14198219 (-) False elf1
TU135100 other downstream 290854 13547512 ~ 13550775 (-) True G114460
TU134829 other downstream 1146120 12694771 ~ 12695509 (-) True G114215
TU134690 other downstream 1323435 12516358 ~ 12518194 (-) True G114097
TU134687 other downstream 1336828 12500971 ~ 12504801 (-) False timm8a
TU134600 other downstream 1417572 12423728 ~ 12424057 (-) True G114013
trnae-uuc_1 other upstream 366253 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135547 other upstream 377653 14220316 ~ 14221855 (-) True G114873
trnav-uac other upstream 625890 14468553 ~ 14468625 (-) True trnav-uac
TU136727 other upstream 2008358 15851021 ~ 15852220 (-) True G115842
TU136942 other upstream 2226072 16068735 ~ 16071362 (-) True G116014

Expression Profile