RNA id: XM_034306106.1


Basic Information

Item Value
RNA id XM_034306106.1
length 4774
RNA type mRNA
GC content 0.45
exon number 6
gene id pcdh19
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 13841619 ~ 13915588 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAGCTCCGCGTTCACTAGTGAACACTGAGGGTGCGCGGAGTGAGCTGCAGCTACAGTCTCATTTGGAATTAACCAGCCTCGTCCACATActggatgttttcttttttaagcaGCTGCATGGACTACCACataggccaagtcaacactgaACTTACTCCTAAATCATTATGTTAAATACGGATTTCCCCCGTGACTGGACTAAAACCTGCTAATATGGCacattttttttgaagaaattgGTTGCGAGAGATCTGGCAGTCGCTTAAGGCTGAAGCGCCCGGAGCTGGCTCGTTTGGGAATACTGGAGTACCGTGAATCTGACTTGCACAGTTATCACTGATCACTGATTCGTGCATGATCATCGTCATTACCAGCATTGTCATCGCTGTTCTTGTTCCTGAGTCCCACCGATTTTTTCGCCGTGCTAATATCTGGATTCTTCATCGGTTCAGTGGATTTGGGCTTCGACATATAGGCCAATCACGGACTGAAGAGGAGAGGCATGTTCATTTTAACATGTTGAGTTTTCTGGGCACAGCAGATGGTCAGAAAgccaattcattaaaaaaaaaatcgtgtaTGTTCTAGGACACGAGGTGATGCGTTCGAACTGGAacgtttaaaataatttctgtatCACTCATAGCCCAATTTGTAGACCTGTCTATCCGTGGCGACTGTTTTTCCTCACTGTCACAAAATGGTCGGCTCGCGGTAGCGTTCTGTAATATAATATTGAATTTGATGTTTGCGAATGCGGTCAGTGTATTTTTATGGCTTCTGTTTTACGCAGTCTTGTTGTCGTTCACGATATATTCGCATTTCTTGCGATGctctaatatatatttttcgaTGACGTAAAAAATGGCCAGCAAGAAAGGAGCGATGGAGTGACTGGAAGTTGTCCCTCAGTCTCAGCCATTCCGATGAAATCAGTTAGGCTTTTTTAAGGCCGTGTTTCCGACATCGATTTTATAGACctatatataaacagaaaccCGCTGGGATGTCCGTCATGCGGTTCGTGGCTGTAGCCTAGTCGACTAATAAGTGAGAAGAGGAGGACATCAACAGGTTTTCATCGCTCTAAGGATATGGATTTCGTGCAAGTGATTCTGTGCTTTCTGGCGTGCTGGAGCGGCGCCGGGGCCGTTTTCAGTCTGAAATACACAGTGGAAGAAGAATTGCGTGCGGGAACGAAAATCGCCAATGTCACGGCGGACGCGAAAGTGGCTGGATTCGCGCTCGGGAATCGGCAACCTTTTTTGCGAGTAATCTCCAATTCCGAACCGCGATGGGTAAACCTAAGCCCGGCAGGACTGCTCCTCACTAAGCAGAAAATCGATCGCGACGCTGTTTGCCGGCAGACGCCGAAGTGCATCATTTCTCTGGAGGTAATGTCCAACTCGATGGAGATATGCGTGATTAAAATCGAGATACTGGACGTGAACGATAACGCGCCCCGATTCCCCACCAGCCATATCGACATTGAGATATCGGAAAACGCCGCTCCAGGCACGCGGTTTCCCCTAGAGGGGGCAAGCGATCCGGACTCAGGAAGCAATGGTGTTCAGACTTACACGATCACCCCCAACGATATTTTCGGCCTGGAGATCAAGACCAGGGGAGATGGATCTAAAATAGCCGAGCTCATAGTAGAAAAGACTCTGGACAGGGAGACGCAGTCTCATTATACGTTTGAAATCACGGCTGAGGACGGAGGAGAACCACCAAAGACTGGGAGTGTACAACTTAACATCAAAGTAATCGACTCCAATGATAATAACCCTGTGTTTGATGAGCCCGTTTATACTGTTAATGTGATGGAGAATTCTCCTATAAATACATTAGTAATAGACTTGAATGCCACTGATCCAGATGAAGGAACAAACGGTGAAGTTGTAtactcatttattaattttgtgtCCAATCTGACTAAACAAATGTTCAAAATTGATCCCAAAACTGGTATCATAAGTGTTAATGGAATTTTAGACCATGAAGAACTGCGTGTGCATGAAATAGATGTTCAAGCCAAAGATCTGGGTCCAAATTCCATTCCAGCTCACTGCAAAGTGATTGTCAATGTAATAGACGTCAACGACAATGCACCAGAAATTAAGCTTTTGTCTGAAAACAGTGAGATGGTAGAGGTCAGTGAGAATGCACCTCTTGGATATGTCATCGCACTGGTTAGAGTTTCAGACAATGATTCAGGTGCAAACGGGAAAGTGCAGTGCAGACTGCAGGGCAACGTGCCTTTCAGACTCAATGAGTTTGAGAGCTTCTCCACCTTACTTGTTGATGGCCGACTAGACAGGGAGCAGAGAGACATGTACAATCTTACCATCTTGGCTGAGGATAGTGGTTATCCCCCACTGAGAAGTTCAAAATCTTTTGCGGTTAAAGTAACAGATGAAAATGACAATCCCCCTTATTTCACAAAGCCACATTATCAAGCAATGGTGTTGGAAAACAATGTCCCAGGTGCGTTCCTACTCGCGGTGTCTGCCAGAGATCCTGACCTGGGAATGAATGGCACAGTGTCTTATGAAATCATCAAGTCAGAAGTTCGAGGAATGTCAGTGGAGTCTTATGTTACTGTAAACTCAAATGGCGAAATTTATGGGGTCAGGGCTTTTAATCATGAAGACACACGGACATTTGAATTTAAAGTCTCTGCCAAAGATGGAGGAGATCCTTCATTAACAAGTAATGCCACAGTGCGCATTGTTGTTCTGGATGTAAATGACAACACGCCTGTGATGACGACCCCACCACTCGTTAATGGCACTGCAGAGGTTTCCATCCCCAAAAATGCTGGAGTTGGTTATTTGGTTACTCAAATCAAGGCTGATGACTATGATGAGGGAGAAAATGGAAGACTGACATATTCCATCTCGGAGGGAGACATGGCATACTTTGAAATTGACCAGATTAACGGTGAAGTGCGGACCACAAAAATGTTTGGAGAAAACGCCAAGCCCTCCTATCAGATCACTGTTGTGGCCCATGATCATGGCCAGACATCTTTATCTGCTTCTGCGTACATCATTGTCTACCTCTCTCCAGACCTTAATACACAGGAACAGATTGGACCAGTAAACCTGTCCCTCATCTTCATTATCGCTCTGGGTTCCATTGCTGCTATTTTGTTTGTCACAATGATCTTTGTAGCCGTGAAGTGCAAAAGGGATAACAAGGAAATTCGCACATACAACTGCAGttttttttaccTGCGCAGGGTGGCGGAGTACTCATATGGCAACCAGAAGAAGTCgagcaagaaaaagaaattgaGCAAGAATGATATCCGCCTGGTGCCACGTGACGTGGAGGAGACAGACAAGATGAATGTGGTGAGCTGCTCATCCCTCACTTCCTCACTTAACTACTTTGACTACCACCAGCAGACACTGCCACTGGGCTGCAGACGCTCTGAGAGCACCTTCCTCAACGTGGAAAGCCAGAACTCAAGAAATGCCGCACCGATCCATGGCTACCACCACACCTTCACTGGGCAGGGCCCACAACAGCCCGACCTCATCATCAACGGCATGCCACTGCCAGAGacaGAGAATTATTCCATTGACTCCAGCTATGTAAACAGCAGAGCACACCTCATCAAAAGTACATCAACATTTAAGGACATGGAGGGTAACAGCCTAAAGGACAGTGGTCATGAAGAAAGTGACCAGACGGACAGTGAGCATGATGTACAGAGGGGCCACTATGCTGACACAGCTGTGAACGATGTACTCAATATGACTGTGCCTCCCAACAGCTGCCAGCTATCAGATCCAGGATCCTGGAGAGGTTCACTAGTGTTCGGCTGCCAGGTTCTGGCCTGCTCCACTCAGGGCACATCTTGCCCTGGGagtcttttattcatcagtCTCTCTGTCCTTATTGTGGTTGGACTGGACAGAGGCTCTATCAGTGGACAAGTACAATAGGCAGTGGGAGAAGATCCCTGCTGGCAGATGGCCCAAAGCACCCACCCAAATCTCACTTGAGTCTATTAACTCTCATCAGAGCTGCTCAGCTGAGTTAGCTAAAACTCATCACCACAAAAAAGAAAGTGACACACAGCTGCAAAAGAGTACGCACATCAAAAAAGGAGGCCATGCATGAGGAGTCAGTTCTACCAACACAGCTTACTAAGATGTGCTCATTATGTACTTTGGCATTAGATGACTGTTTACCACATTGTATTTCTCCCCTTCACTTTTCAGTCTTTCTCTTTCAAGGCAAATGATTTTACACTTATCCTGCACTGATTAAAGGAAAAGCACACAGTTTTCTATTTTGGAATGCATAGACATTTATCACTGCAGCTGggaagaaaaagtgaaaaaggggGAGACAGGACCATACTATCACTGTGGCAGCATATGTGTGATATTCTTTTAACCCcttctgtatataaataaagtgtgttgCTATTACATAGAAGCTTtctggacagaaaaaaaagtatttttgtcAGCCCCAtctgttgttatttttcattGCATGCATTTTAGTACATTTGCAATTTCTGTTCTGCATGATGACCTCAGTTCTGAAGTTGACACTCCATGTGTCCCTTATCTTCGCTTTAAACTCCTCTGAATCTGTGAATCTGTGGTTCCTTATATAAGATAATTGCAACAGTAAATTAATGTTTGGGGTCCGCAGCACCTCCTTTCACAACCTAGTGGACTCATACATATTCTGTGTGATTTAAACTGTTAAGTCACCTTAATATCATTGCAACATAAATCTATCCTA

Function

GO:

id name namespace
GO:0048854 brain morphogenesis biological_process
GO:0001841 neural tube formation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135356 lncRNA downstream 22388 13841629 ~ 13842663 (-) False pcdh19
TU135176 lncRNA downstream 185533 13679307 ~ 13679518 (-) True G114534
TU135171 lncRNA downstream 193561 13671256 ~ 13671490 (-) True G114529
TU135116 lncRNA downstream 281308 13583507 ~ 13583743 (-) True G114476
TU135099 lncRNA downstream 327277 13537546 ~ 13537774 (-) True G114459
TU135385 lncRNA upstream 60137 13975725 ~ 13975926 (-) True G114729
TU135395 lncRNA upstream 72982 13988570 ~ 13988810 (-) True G114739
TU135417 lncRNA upstream 119054 14034642 ~ 14034895 (-) True G114761
TU135784 lncRNA upstream 552662 14468250 ~ 14474465 (-) True G115100
TU135841 lncRNA upstream 624520 14540108 ~ 14540308 (-) True G115143
XM_026918593.2 mRNA downstream 801619 13062338 ~ 13063432 (-) True LOC113529411
XM_026917728.2 mRNA downstream 854935 12944152 ~ 13010116 (-) False fbxo38
XM_026917724.2 mRNA downstream 854937 12934557 ~ 13010114 (-) False fbxo38
XM_026917810.2 mRNA upstream 253247 14168835 ~ 14208465 (-) True elf1
XM_026917812.2 mRNA upstream 253247 14168835 ~ 14198219 (-) False elf1
XM_026917809.2 mRNA upstream 253247 14168835 ~ 14198218 (-) False elf1
XM_034305911.1 mRNA upstream 253247 14168835 ~ 14196430 (-) False elf1
XM_026917811.2 mRNA upstream 253247 14168835 ~ 14187698 (-) False elf1
TU135100 other downstream 314276 13547512 ~ 13550775 (-) True G114460
TU134829 other downstream 1169542 12694771 ~ 12695509 (-) True G114215
TU134690 other downstream 1346857 12516358 ~ 12518194 (-) True G114097
TU134687 other downstream 1360250 12500971 ~ 12504801 (-) False timm8a
TU134600 other downstream 1440994 12423728 ~ 12424057 (-) True G114013
trnae-uuc_1 other upstream 293328 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135547 other upstream 304728 14220316 ~ 14221855 (-) True G114873
trnav-uac other upstream 552965 14468553 ~ 14468625 (-) True trnav-uac
TU136727 other upstream 1935433 15851021 ~ 15852220 (-) True G115842
TU136942 other upstream 2153147 16068735 ~ 16071362 (-) True G116014

Expression Profile