RNA id: TU135547


Basic Information

Item Value
RNA id TU135547
length 966
RNA type TUCP
GC content 0.45
exon number 3
gene id G114873
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14220316 ~ 14221855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacttgaTTCTGCTCATGTGTATCTGAAGCCTATTCCAGATGCAATGCCTGTCCATTCCATGACACCACATTATaggacacactcattcacacctgggggcTCTTTAGAGTGGGAGGAAACTAAGGGTGCAACAATCCATCGATATAGATCGATGTATCTATCAAATAACCATCGATCTGATGTATCGATGCAAAACATAAACACTGACGCATGTATAATTTTTAAGATGGACTTTTATTTAGGACATCCCAGCCACGTCCCGGACGTGACGTCCGTCAAAGTTTAAGTTCATCACGGCTCCTTACTTGCACGAAATATGTAGCATTTCAAAGTGATACATATATGgtatcatcatgaaacttgTGATTTACACCcctacagaaaacacacacagggaaaacagagaagccagaggaaacacacacagggaaaacagagaagccagaggaaacacacacagggaaaacagagaagccagaggaaacacacacagggaaaacagagaagcgagaggaaacacacacagggaaaacagagaagtgagaggaaacacacacagggaaaacagagaagcgagaggaaacacacacagggaaaacagagaagcgagaggaaacacacagggaaaacagagaagcgagaggaaacacacacagggaaaacagagaagtgagaggaaacacacacagggaaaacagagaagtgagaggaaacacacacagggaaaacagagaagcgagaggaaacacacacagggaaaacagagaagtgagaggaaacacacacagggaaaacagagaagcgagaggaaacacacacagggaaaacagagaagcgagaggaaacacacacagggaaaacagagaagcgagaggaaacacacacagggaaaacagagaagtgagaggaaacacacagggaaaacaGAGAAgcgagaggaaacacacacagggaaaacagagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135417 lncRNA downstream 185421 14034642 ~ 14034895 (-) True G114761
TU135395 lncRNA downstream 231506 13988570 ~ 13988810 (-) True G114739
TU135385 lncRNA downstream 244390 13975725 ~ 13975926 (-) True G114729
TU135363 lncRNA downstream 310395 13908968 ~ 13909921 (-) True G114707
TU135356 lncRNA downstream 377653 13841629 ~ 13842663 (-) False pcdh19
TU135784 lncRNA upstream 246395 14468250 ~ 14474465 (-) True G115100
TU135841 lncRNA upstream 318253 14540108 ~ 14540308 (-) True G115143
TU136092 lncRNA upstream 524084 14745939 ~ 14747993 (-) True G115325
TU136072 lncRNA upstream 533479 14755334 ~ 14772803 (-) False ebf1a
TU136097 lncRNA upstream 563474 14785329 ~ 14786018 (-) True G115329
XM_026917810.2 mRNA downstream 11851 14168835 ~ 14208465 (-) True elf1
XM_026917812.2 mRNA downstream 22097 14168835 ~ 14198219 (-) False elf1
XM_026917809.2 mRNA downstream 22098 14168835 ~ 14198218 (-) False elf1
XM_034305911.1 mRNA downstream 23886 14168835 ~ 14196430 (-) False elf1
XM_026917811.2 mRNA downstream 32618 14168835 ~ 14187698 (-) False elf1
XM_026917775.2 mRNA upstream 25217 14247072 ~ 14383606 (-) False drp2
XM_034305852.1 mRNA upstream 25217 14247072 ~ 14341496 (-) False drp2
XM_026917773.2 mRNA upstream 25218 14247073 ~ 14383606 (-) False drp2
XM_026917772.2 mRNA upstream 25218 14247073 ~ 14383606 (-) True drp2
XM_026917774.2 mRNA upstream 25218 14247073 ~ 14313289 (-) False drp2
trnae-uuc_1 other downstream 11329 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135100 other downstream 669541 13547512 ~ 13550775 (-) True G114460
TU134829 other downstream 1524807 12694771 ~ 12695509 (-) True G114215
TU134690 other downstream 1702122 12516358 ~ 12518194 (-) True G114097
TU134687 other downstream 1715515 12500971 ~ 12504801 (-) False timm8a
trnav-uac other upstream 246698 14468553 ~ 14468625 (-) True trnav-uac
TU136727 other upstream 1629166 15851021 ~ 15852220 (-) True G115842
TU136942 other upstream 1846880 16068735 ~ 16071362 (-) True G116014
TU136943 other upstream 1846880 16068735 ~ 16071362 (-) False G116014
XR_004578451.1 other upstream 1884924 16106779 ~ 16115433 (-) True arr3b

Expression Profile