RNA id: TU136072


Basic Information

Item Value
RNA id TU136072
length 4146
lncRNA type sense_over
GC content 0.42
exon number 6
gene id ebf1a
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14670189 ~ 14775493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACTGAGTAATGCAGCTGAGGAACCGGCACCGAATCATTAACACCACGCTGTAATGGGGATTTAGTCCAATTCACATgttttcttggctgacagtTAAAACTGATTGAGTTCAGCTCATGTGTTTTTCCGCTTGGAACTTCAGTTTACATTTATTGCACATGGGATCAGTCCTGTGTCCGGCTGCTTTTCTAATAGatatgtatatatctgtatttatttgtgtaggAACCGACTGGTGAAAAGACAAACAATGGGATTCATTATAAATTACAGCTTCTCTACAGTAACGGCATAAGGACAGAACAAGACTTCTATGTACGACTGATTGACTCCATGACAAAACAGCCTATTATTTATGAAGGTCAAGACAAGAATCCGGAGATGTGCCGAGTGCTGTTGACACACGAGATCATGTGCAGcCGCTGCTGTGACAAGAAGAGTTGTGGCAACCGTAACGAGACGCCCTCTGATCCCGTCATCATAGACAGGTAAGAGGTGGATTAACACACTTTGgctgtgcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtaagCATATGCGTGAAATGTAATAAAGATTTGCCCATTTATTAGTaatgctatgtgtgtgtgtgtatgtgtgtgtgagggaaagggagagagcGAGATAAAGCGAAAGTGAATATGGGCATGTGTTTTGGATGCTCTAAGATAAAAGCTCCATCTGCCTATGGAGGTGATGAGCTGATGACCTCTTTGGTGGATCGCCACTTCAGAAAGAATTGAAAAGCGCTGAACTATCtgtcatatttatttcaatgaACCATTATTACAGTTTATGAGCAAGAGAGACACTCACTCCAGCACTTACACACCCACAATCattagtagtgtagtgtgagagCTCGCTCTCTGCCTCCATGgctttttacagaaaacatcctTCCAATCAAAGCCTGCAGTTCAAAGCACTCAGCATCACTTGTGAAGACCAAACCAGCATCATTTGatttgtgtgagagaaagaagcATTTGTCACAGAAGAGTTTCTGCACAAACGAAACCAGTAGCAGGAACATGTTGAGTCTTTGCTGTAGCCCACTGGGTTCAGTGGTGTGTGTCTCCTGTTCAAATTCTTCTTAACCCACTCAGCCCTATATTAAGGCCTTGAAACCTGTGTGTAAATTGAACACAGACGGTGTTATCACAGAATCAACCAGACTGAGCTTTTCCATCAGTCAGAAGACACTCAGCTTTACTCTGATTCCCTTACCagagttaataataataataataataataataataataataatacactctGATGGGCTGTGGTATGACCCACTAGAGTCAAAGTACTCAAAACCAGTTTTAAATCAATGCTCTGTACATCACCAACAAAAATGGTGGATGAAAACTGATCTGTATAAAAAATGGCAGCGTGAACGATACACCAGCATGAGAAATAATTGATATTGGAAGGAAATGACTCTTTCATAGGAAACAAATGCCAATACTGTCCAGAAATTGGTCAACACAGGAAGATGATGTTCACTTTTCACTTCCGTTATAGACGAAATTTTCTTTTACAGAGGATTCCTTTAGGTTTTTTGAAAGTTGTAGAGTGAAGGAAAGCCTGTAACGGAGGAGAGTTTAGAGTTGAAGTTGAGGGCAGATGTCTACACAAGAGTTTGTCATTTGTgtccatgtgtttgtgtgttaatgagcCATGGTGCTATCAGATGAACACAGCTGTCGTAGTTTCACTTGggctctgtctgtgtggagtgcTGTTTGTGAAAAAAGGTACTACCTGGATGCTGGGTGTGTGTATCGAGCTCATTTCTGCTCCACTGGGCCAGAACGCTTCACAGTTCACAGAGACAGCTGCACCCTCACTATGCCACATGGCCTCACCTCCACCCaccgcgcgcacacacacacacacatttctctctctgcccATCACTGCGCACTTTTCTTGACTGTTGTCCTCCATTCACTCATTTGTTGCACTGAATCCAATAGTTTTTCTCATTGCATTGGTACGAGAGTGAAGGTGCTATAAGTAGATTCCCAGCCGTGCTCTGACCCAGCATGGGCACCCCTGGGCTAAGGTGAGAGCACAGCTAATTGAtggcaaaagagaaaaagaattaAGCAACAGTTACCCCTCCATCACTCCGTACCTACAGGACAGGAAAATAGGTCAGgtaaaaagagagatagaatgAAGCGATTTAAAGAGTTTGATTAGAATTTTTCGGCAATGCTGCTAAGGCTGGGGTTCAAGTAAATACATACCAAACTCAAATGCATCCAAAATATGAATTCAAGCTTCTGTTTCCCCCCGATGTTCTTTAGTTGAATAAATAAGAGCTCATTAGTGTGCTCTTGTTTCAAACAGCTGATTAGGTTTTACAGCAGTAATTAGCCAAGCTAGCACTAATTCCTCTGGAAGAGTAATGAGAATCATTTCCTAATTAGCTTCCTCTCATAAGCAACCGCAATAGGCTGCTACAACAAAACTGGAGGAATGTCGGAAGAATAACGTCAACTTACAATACCTTATTAGATTGTCGAAAGAACAAATCTCAGCCTCACTGCAGTACAGGTTCAGTGTTAGTGGAAAGCACGCAAAGGTGTGATAGCACATGTTTTGAGGAGGATGTGAGTAATCTGGGCTGAGCTAACTGACCAGGGCAGAAAGCAGATTTTAATTAAGAATGCTCCTCTGGAATGAAAAGTAGTCCATTAACATTTGTTCCTGCTTTCATTTGCATACacatgaaagaaagcaagagtgagcgagtgagcgTCCATCCTATACAACAGATTCTCCTTCACATTCCTCATCTTTTCTAACTTTTGACTCCCAAATCCATTTAATGCCCCAGTAAGATTATTTCAAATACTTTAATCGGCTCCCATTGACACACACAAAGGGCACTGACATCTAATAGCAGCCCTTTAACTCTGCTTTTCACTACCTCCTGTTTCATCTCTATCAGcatcccctccctctctctttctctttctctctctttctttctgctccTGTGTGCATTGGGAGTAACAGAAGCTCACTAAGCTGTACAGTAGTGCGCAGAGCTGTTGTTCTATCTCCCTGGGAACAATCTACCATGCCATGGATACTCTGTGATTTTCAAGTTCTTGTATTAAGGAATAATACAGGAACTCTTCTGCTACTCTGGGCCTGCTTGTGACCTTCAACCATGCTGATGGGCTTCTTTTTGAAGATGTGTATGACATCTGGATTTGCACAGAGTGAGGAAATAGGACGGGGAGAAACActtcatagagagagagagagagagagagagagagacacgagACATGTTGGAAAATGGGTCACTGTGCCCTTTGAGTCTAAATTTTTCAAGGCCGTCCTTGGCTGCTGACCCACACCACACTCTGCAAAGCTGGCCATAAGTGATGAGCAAGAAAATGACCTTCTGTTTAAAATAAGAGTagcacaggaagtgatgtcatgcaTTGACTTGTGACCTTTTGTCCTGAATATTTTGTTGTGTGAATCAGCAAACTGCAGAGTTATTTCATGATGTACATACTCCCTCCACCCCACActttcatgtacacacacactacctaaACCTAGGTACAACCCTAAAAAAGAAAGGGGGCACTTAACAGACTTAACGAGCATATGTTAATGGAATAGAGGAGGGAAAGGGGGaagggagtgtgtgagagaggaaatACGGCAGTGTGTATTATGTTAGTGGATTAACCAGATCGGTTGCAGCGAGTCGTTCTCCACATCAGCGGGAAGAGAACGATCTTAACTGGCTGAAGCGACCATTGTTAGAGTAATCCTGTCCAGACTGCAGCCCTATTGTGAGGCAATTAAAGACTGAGAGAGTGTagagagctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcagtgagaacaaaagagagagcATGTTTTATACAGTGAGAGAGGATGTTAAAATTTGTGTCACTACTGATGTTAATGTCTAAGAGATGAAGACAGTAGAAGAATGACtttcagaaaaaaggaaaggaaagaaaacagtaTATCACTCagcagtgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136092 lncRNA downstream 7341 14745939 ~ 14747993 (-) True G115325
TU135841 lncRNA downstream 215026 14540108 ~ 14540308 (-) True G115143
TU135784 lncRNA downstream 280869 14468250 ~ 14474465 (-) True G115100
TU135417 lncRNA downstream 720439 14034642 ~ 14034895 (-) True G114761
TU135395 lncRNA downstream 766524 13988570 ~ 13988810 (-) True G114739
TU136097 lncRNA upstream 12526 14785329 ~ 14786018 (-) True G115329
TU136099 lncRNA upstream 30651 14803454 ~ 14804191 (-) True G115331
XR_004578406.1 lncRNA upstream 234908 15007711 ~ 15016373 (-) False LOC113528719
XR_004578405.1 lncRNA upstream 234908 15007711 ~ 15015826 (-) True LOC113528719
TU136210 lncRNA upstream 307989 15080792 ~ 15082469 (-) False tmsb2
XM_026917935.2 mRNA downstream 133928 14600113 ~ 14621406 (-) False clint1a
XM_026917934.2 mRNA downstream 133928 14600113 ~ 14621406 (-) True clint1a
XM_026918509.2 mRNA downstream 160675 14591624 ~ 14594659 (-) False zbtb3
XM_026918508.2 mRNA downstream 160675 14591624 ~ 14594659 (-) True zbtb3
XM_026918205.2 mRNA downstream 170356 14576136 ~ 14584978 (-) False trmt12
XM_026918119.2 mRNA upstream 13280 14786083 ~ 14823173 (-) True rnf145a
XM_034305997.1 mRNA upstream 13280 14786083 ~ 14822548 (-) False rnf145a
XM_034305996.1 mRNA upstream 13280 14786083 ~ 14816152 (-) False rnf145a
XM_026918084.2 mRNA upstream 68377 14841180 ~ 14854258 (-) True il12ba
XM_034306013.1 mRNA upstream 145193 14917996 ~ 14932160 (-) False sh3tc2
trnav-uac other downstream 286709 14468553 ~ 14468625 (-) True trnav-uac
TU135547 other downstream 533479 14220316 ~ 14221855 (-) True G114873
trnae-uuc_1 other downstream 546347 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135100 other downstream 1204559 13547512 ~ 13550775 (-) True G114460
TU134829 other downstream 2059825 12694771 ~ 12695509 (-) True G114215
TU136727 other upstream 1078218 15851021 ~ 15852220 (-) True G115842
TU136942 other upstream 1295932 16068735 ~ 16071362 (-) True G116014
TU136943 other upstream 1295932 16068735 ~ 16071362 (-) False G116014
XR_004578451.1 other upstream 1333976 16106779 ~ 16115433 (-) True arr3b
XR_004578453.1 other upstream 1752827 16525630 ~ 16550675 (-) False zic6

Expression Profile