RNA id: XM_034305631.1


Basic Information

Item Value
RNA id XM_034305631.1
length 1546
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC113528772
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15071998 ~ 15076599 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATTCACTCATTTCACACTTATAACAGTGCTGGCTATGCTTTCCAACATGAACACTGcaaaaTACTTGAGCCTTGGGTCACTGAAAGAGGCCATCCCAGAAGACTCGGAGGACTTACTGGCATCAATGGGCTCTTGCCAGCTCCTCGCATCTTTGGTCCTGTCTGTATGCTGTCATGTATTCTCCACAACAGCATGGTCAGTGAATAACTTCCTGATGACAGGACCCAAGGCATATCTTATGTACGCAAGTAGCGTGCAAGCAGGGGCACAGCGCGGCATTGAGGAGTGTAAATACCAGTTTGCATGGGACAGGTGGAACTGTCCGGAGAGCGAATTACAGCTGTCAACACATAAAGGATTGCGAAGGGCAACCAAAGAAACGGCTTTTGTACATGCCATAAGTGCAGCTGGAGTTATGTATACACTGACCAAGAACTGCAGCATGGGAGACTTCGATAACTGTGGCTGTGATGACTCAAAAGCTGGAAAAATTGGAGGTCGAGGTTGGATTTGGGGTGGATGCAGTGATAATGCTGACTTCGGGGAGAACATTTCTAAGCAGTTTGTAGATGCGCTGGAAAACGGGCACGATTCACGCGCTGCCGTAAACCGTCACAACAACGAGGCTGGCAGACTTGCTATCAGAGCGACCATGAAGAGATCATGCAAGTGTCACGGCGTGTCCGGAAGCTGCAGCGTTCAAACGTGCTGGATGCAACTTTCTGACTTCAGGGAGGTTGGAAACTACCTGAAAATCAAATACGACCAGGCACAGAAGCTTGAGCTGGACCAGCGACGCATGCGCGCTGGGAACAGCGCTGAGAATCGCGGCGCGATCGCAGACACTTTCAGCAGCATCGCGCGCACCGAGCTCATTCACCTGGAGGACTCCCCAAATTACTGTGTGAAAAATCTGAGCCTCGGACTGCACGGAACTGAAGGCAGGGAGTGTTTACAGGGTGGCAGTAATCTGTCGCAGTTTGAAAAGCGAAGCTGCAGAAGGCTGTGCCACGAGTGTGGCTTAAAAGTAGAGGAAAAGAGGATAGAGATCGTGAGTAGCTGTAACTGCAAATTCCACTGGTGCTGTACGGTGAAGTGTGAGAAGTGCACACAATTCGTAACAAAACACATTTGTGCAAAAAGAAATAAGGGCAGTCGGTCACATAACAGTTCACGAAAGAGGCAGCGTGTGCGTAGTTAATCCCCCCCGCCctctaaaaaaatctaaagtgtgtatttgtacaTATTGACGATTATTTTAAAGCAGACATCAAGAAAATGAAATTCCTAACTCTGACAAAACTTCCTTTGCTTGGTTGTTTAATTTCCAGTACTTATGTTCTATATGTGCACTTTTTGTTCTTAATATCAGATCACGCATTTGGTTGCTAAACGTTAAAtaattgttctttattttgaaCACAAACTTCTTAATTTCCTGACAATGTTTACTGCACAAGGGGTTAAAGTTTTCgtctcttttttatctttaagtGTATATGATATTTTAAACTCAGAAAGCATTAAATATTTTGGACataata

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0007492 endoderm development biological_process
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0001756 somitogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0035284 brain segmentation biological_process
GO:0030182 neuron differentiation biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0007398 ectoderm development biological_process
GO:0001654 eye development biological_process
GO:0044332 Wnt signaling pathway involved in dorsal/ventral axis specification biological_process
GO:0030902 hindbrain development biological_process
GO:0030903 notochord development biological_process
GO:0021512 spinal cord anterior/posterior patterning biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578406.1 lncRNA downstream 55625 15007711 ~ 15016373 (-) False LOC113528719
XR_004578405.1 lncRNA downstream 56172 15007711 ~ 15015826 (-) True LOC113528719
TU136099 lncRNA downstream 267807 14803454 ~ 14804191 (-) True G115331
TU136097 lncRNA downstream 285980 14785329 ~ 14786018 (-) True G115329
TU136072 lncRNA downstream 299195 14755334 ~ 14772803 (-) False ebf1a
TU136210 lncRNA upstream 4193 15080792 ~ 15082469 (-) False tmsb2
TU136278 lncRNA upstream 56598 15133197 ~ 15133435 (-) True G115477
TU136359 lncRNA upstream 242141 15318740 ~ 15318949 (-) True G115553
TU136360 lncRNA upstream 244421 15321020 ~ 15321301 (-) True G115554
TU136440 lncRNA upstream 323968 15400567 ~ 15402679 (-) True G115620
XM_034305634.1 mRNA downstream 112 15069823 ~ 15071886 (-) True LOC113528773
XM_034305633.1 mRNA downstream 128 15069823 ~ 15071870 (-) False LOC113528773
XM_026917548.2 mRNA downstream 18620 15051360 ~ 15053378 (-) True foxi3b
XM_026918306.2 mRNA downstream 29499 15039603 ~ 15042499 (-) True pttg1
XM_034306004.1 mRNA downstream 140738 14917996 ~ 14931260 (-) False sh3tc2
XM_026917575.2 mRNA upstream 4185 15080784 ~ 15082504 (-) True tmsb2
XM_026918542.2 mRNA upstream 221754 15298353 ~ 15314460 (-) False lonrf1
XM_026918543.2 mRNA upstream 221754 15298353 ~ 15314456 (-) True lonrf1
XM_026918541.2 mRNA upstream 221754 15298353 ~ 15314453 (-) False lonrf1
XM_034305877.1 mRNA upstream 221754 15298353 ~ 15312525 (-) False lonrf1
trnav-uac other downstream 603373 14468553 ~ 14468625 (-) True trnav-uac
TU135547 other downstream 850143 14220316 ~ 14221855 (-) True G114873
trnae-uuc_1 other downstream 863011 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135100 other downstream 1521223 13547512 ~ 13550775 (-) True G114460
TU134829 other downstream 2376489 12694771 ~ 12695509 (-) True G114215
TU136727 other upstream 774422 15851021 ~ 15852220 (-) True G115842
TU136942 other upstream 992136 16068735 ~ 16071362 (-) True G116014
TU136943 other upstream 992136 16068735 ~ 16071362 (-) False G116014
XR_004578451.1 other upstream 1030180 16106779 ~ 16115433 (-) True arr3b
XR_004578453.1 other upstream 1449031 16525630 ~ 16550675 (-) False zic6

Expression Profile