RNA id: XM_026917773.2


Basic Information

Item Value
RNA id XM_026917773.2
length 4890
RNA type mRNA
GC content 0.50
exon number 23
gene id drp2
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14247072 ~ 14383606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACAGGAAGGGATATTACTGAATTGTTCATTAGTCTTCAGTCTGTCATTGCACTCCACTGCCATCTGTTCAACTACAGTctttcataaattcattaaaactCATAGTCTAGTGGAAATTCCAGGCGATCAGTAACCAGGTGAACCAAGTCGGTGAGGTATGGCTAGTTGGAGCCATTAAAATGGGAGTATATGATCTCTAATGGATTTTAATTGGCAGCCTGGACGTGATAGAAGAGCTTCACTAAACAGTCTAAGAATAAAGCAGGCTATAAGTATTTCCATTCTGCTTCTTTTTCATGTTAACAAGCAGTTTTTCATCTATAGTGCCAGCTTGTGCCCTGCAACTGATCAACTTGGATGTATTTATGATGTTAAGTCCCGTTCCCGTTTCTATCTGCGCTGTCTAATGAGCTCCGGAAATGCACAGCTCTGTTTCCCCTGGCAGTGTTCAGGGGTTTGGTGCGCGCGCCTCTCGGTGCTACCGGAGCGAGATAGCGCTGAACAGCGCAGTTCAGAGGAGAAGCGTGTAGTGTAGTCCCAACTGCTCGTGCTCCCGGTACTGTGCACAAACCTGAAGAGCTCAATGCTCAGAGCTCAATCCTCAGAGCTCAAtgctcagagctgaagccagtgTGCAAATGGTGTTAATGCTGTCCAAGCTCCAGCTTTCAGCCTGTCTTGGAGGTCATCTCTAGCGCACGGGCAGATCAGCGGACATCTCTGGGGCATTTACTCACCTTGGTGGAGGAGCTGCAGGGCGGCCCTCGTGGCCGAAATGCCACTGTGTGCCCTGCAAGTCGGTGGGGGATCCTGAGGGGCAGGAGGTGCCCATCGAGTGCAGCGGGCACAACATCAAACATTCTGACCAAAACATGAACCTGTGTTGGACCGAGATCAAGCGCAAATCCCACAACATCAGGGTGCGTCTGGAGGCCTTCTCAGACAACAGTGGGAAACTGCAGCTGTCACTGCAGGAAATCATCGAATGGCTGACAGCTAAAGATGAAGAGCTATCAGAACAGTTGCCTATAGGGGGTGATGTGGGGGCTGTGCAGCACCAGCGTGATTTCCACCAGGCCTTTATGGAGGATGTGAAGTCCAGAGGGCCCTTCATCTACTCAGTACTGGAGTCAGCACAGTCCTTCTTAGCCCAGCATCCCTTCCAGGAACCTGATGAAATGCTACCGGATGGCAAAGAATTGTCTCCAAGGCGGCGGATGCAGAATGTGAGCCGCTTGGTATGGAAGCAGGCTAATGTGGCCAGTGACCTGTGGGAGAAGCTGACAGCGCGTTGTGTAGATCGCCACCGACACATGGAGAGGACGCTTGAGCGGTTGCTGCAGGTGCAGGCAGCCATGGAGGAGCTGTCCCATGCTCTGGAGCAGGCTGATGGTGTGAGGGATGCCTGGGAGCCTGTGGGAGATCTCTTCATCGATTCACTGCAGGACCACATCGATGCAACAAAGCTGTTTAAGGAAGAGCTGACTCAAGTCAAGGAAGGCATGAAGCATATCAATGACTTGGCCCACCAGCTAGCCATTTCCGATGTGCACTTGTCCATGGAAAATGCTCGTGCCCTTGAGCAGCTCAACAGCAGGTGGAAGCTGCTGCAGGGTTCTATAGAAGAACGCATGAAGCAGTTGCAGGATGCCCACAGAGACTTTGGCCCTGGATCACAGCATTTCCTCTCTAGTTCAGTGCAGATACCTTGGGAGCGTGCTATATCCCCAAACAAAGTGCCATACTACATCAACCACCAGGCACAGACAACCTGCTGGGACCATCCAAAGATGACAGAGTTGTATCAAGCACTGGCGGACCTGAACAACATCAAATTCTCAGCATACCGGACAGCCATGAAGCTACGGCGAGTGCAGAAAGCTCTAAGACtggaccTGCTGAAACTGACCAGCATAGCTGAGGTATTCAGAGAGCAGGACCTGCAACATAGTGAATACATGATGGATGTGGTGGAGGTGATCCACACCCTCACTGCTCTGTATGAGAAGCTGGAGGAGGAGCGATCAGTACTCATCAATATCCCACTCTGTGTGGACATGTGCCTCAACTGGTTGCTCAACGTCTATGACAGTGGACGGAATGGAAAGATGCGGGTGCTCTCCGTCAAGATGGGAATAGTTAGCCTATGCAATGCAGACATCACGGAGAAATACAGATACCTGTTTAGACAGGCATGTGAGTCAAATGGCCTGATGGATCAGAAACACCTCAGCCTGCTGCTGCATGAAGCTGTGCAGATCCCTCGGCAGCTTGGTGAGGTGGCAGCCTTTGGGGGAAGTAATGTGGAGCCCAGCGTCCGTAGCTGCTTCCGCATGGCCCCAGGTAAGCCATCTATTGAAGTAACTCACTTCCTGGAGTGGGTGTGTCTGGAGCCTCAGTCCATGGTGTGGCTTCCTGTACTGCACCGTGTGACCATGGCTGAATCTACCAAGCACCAAGCTAGGTGCTACATCTGTAAACAGTGCCCCATTAAGGGTTTCAGATACCGGAGTCTGAAACAGTTCAACGTGGATATCTGCCAGACATGTTTCCTGACCGGGCGAACAACCAAAGGCAAAAAGCTCCACTACCCCATTATGGAGTACTATACCCTGACCACCTCAGGAGAGAAGATGCGGGATTTTGCGAAGACTCTAAAGAACAAGTTCCGATCAAAGCAGTACTTCAGCAAGCACCCTCAGAGAGGCTACCTGCCCGTGCAAACAGTCCTGGAAGCAGAGAGTGGCGAGACGCCGTGTTCCTCTCCCAGGCTaccacatgcagacacacacagcaggatcGAGCACTTCGCCAGCAGGCTGGCAGAAATGGAAAGCCAGAGCTGCTCCTTCTTCACTGACAGCCTCTCTCCGGATGAAAGTCTGGATGAAGATCAGTACCTCCTGCGTCATTCCAGCCCTGCTCTGGAACATGACTGTCCGCCTGGGCCACACTTCCTCACCCACCTTGACTGCCACAACAAAGAGGAACTGCAGCGAACACTGGCCCGTCTGGAAAACGAGAACAGGATGCTGCAGGGTGAGTACCGGCGGCTGAAATGGAAACATGAAGAGGCTGCAGCAGCAACACCACAGCTGGTGGAGGGCATCTCGGGCTTGGGCTTGCCACTTGGACAGCAGGATGAGGAGCTCTTGGCTGAGGCTCGAGTACTGCGGCAACACAAGAGTCGCCTGGAGACACGCATGCAGATACTGGAGGATCACAACAAGCAGTTGGAGTCACAACTCCACAGACTCAGAGAGCTACTGCTGCAGCCCAAAGATGACTCAGAGGCCAATGGGTCAGCTCCCTCCTCTCTGTCGTCGCCTGTGTCAGTGGTGCACCAGGGGGAGCCACTAAGCAAAGAGACCACAGACACTGAGGCTACAGGTGAGGATTTGGAGCCGGAGCAGGACACGGTGCTACAGCTGCAGCAGGTGATCGAGCAGCTGAGGAATGTCTTCCCATCTGAACCAGGCCAATGAGGAGGCACACAGATTCCACACTGCTCAGCTAAACCTGGATTGGGTCCAGAATATGCAAGgcggaaaaaatataaaaattggtTCAGCAGATTTGGaggacatttttttctgatctcCAACTGCAGCTCAGCAGAGAGAGCTGGAACATTTCTGAGTGATTCACTAATGTCTCGTGGTGCCAAAGGCCAACGCTCGATCGGTACACTGTGTTAACCAGCTACCTGTAGtagcagcaggtgtgtgtggcTTCTCTAGTACAGCACAATGACCTCACCACCAACCAGGCACAGAGAAAAGCGAACTTATCTTCCTGTGCCAGCTACTTggtgtttccttttttaattggttaccatttttctgtttatttcttcttcatGCAACACTGAAAATGACTCACGCATATGCAAGCTGTCCAGGTCTTGTATGGCCTCTGCTCTCTGGAGCAAGTGGGAGCTATGGATTTTTTCCTGTGTAGGGTTGGTACATCATCAGCAGAATATAGAATAGTATCTGGAAGCACAGCACTTGTGTTCTGACAAATCCAGCTTAgccctcctttctctctctctctctctctcattctcactcttacctcttcctctttctcatgTGGGTTTTACCTCTGTTATTACATTTACCAagctctcgctcgctctctcgctctcgctctctctctctctctctcacacacacacacacacacacacacacacacatatatcagtGAGGGTATAAACATTCAATCAGTGAGGGCAATTTGTAACACTGCAGTGTGTACTTGGTGGGTACATGGTGAAAGCTTTTGCTTGAAAAATGACAGCTCTCTGCTGTGCCCTGCAGATGGAGGGTGGCCTAGAACAGTGATTCCCAACCTGGGGTGGGACCGGCAAAGATCACACAGGGTGCTGAAGTCTCTTTCAAAAATAGGAAGAAGGGATACACTTTTGCACGATGTTGTCAAAATGTCAGACTCATGCAAAAGGTGAAAGAGGAAGGTGAGGCTCTACATCGTTAGGCACTAGCCAGTAAAAACCTGTCTGAAGATATTAGTGACACACTTTTTCTTGTAGTCAAGACCATATACTTCATGAAGAGTTGCTCTACCAACAAAAGACTCTTTGCCCTGCTGTGTGAAGAATAGGAACATCAGACCTTATTGTTACACACAGAGATGCACTGGGTGTCACTTAGCCAAGTTCTTGTactctgcaaaaaatgacatcttaacAAGATGGAACTACCTTGAATATAGACAATTTTAACTAGTATttctaattataatttatatttctagccatttttactcatttcaagcttgaactAGTCTTGTTGGATTGgttgttttgctcatttttagcatttttgctaatttttagaagctaaattatctgccaatagaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU135417 lncRNA downstream 212178 14034642 ~ 14034895 (-) True G114761
TU135395 lncRNA downstream 258263 13988570 ~ 13988810 (-) True G114739
TU135385 lncRNA downstream 271147 13975725 ~ 13975926 (-) True G114729
TU135363 lncRNA downstream 337152 13908968 ~ 13909921 (-) True G114707
TU135356 lncRNA downstream 404410 13841629 ~ 13842663 (-) False pcdh19
TU135784 lncRNA upstream 84644 14468250 ~ 14474465 (-) True G115100
TU135841 lncRNA upstream 156502 14540108 ~ 14540308 (-) True G115143
TU136092 lncRNA upstream 362333 14745939 ~ 14747993 (-) True G115325
TU136072 lncRNA upstream 371728 14755334 ~ 14772803 (-) False ebf1a
TU136097 lncRNA upstream 401723 14785329 ~ 14786018 (-) True G115329
XM_026917810.2 mRNA downstream 38608 14168835 ~ 14208465 (-) True elf1
XM_026917812.2 mRNA downstream 48854 14168835 ~ 14198219 (-) False elf1
XM_026917809.2 mRNA downstream 48855 14168835 ~ 14198218 (-) False elf1
XM_034305911.1 mRNA downstream 50643 14168835 ~ 14196430 (-) False elf1
XM_026917811.2 mRNA downstream 59375 14168835 ~ 14187698 (-) False elf1
XM_026917776.2 mRNA upstream 133 14383739 ~ 14398448 (-) True cenpi
XM_026918239.2 mRNA upstream 22752 14406358 ~ 14408931 (-) True tmem35
XM_026918315.2 mRNA upstream 32928 14416534 ~ 14423653 (-) True arl13a
XM_026918112.2 mRNA upstream 71203 14454809 ~ 14464599 (-) True cstf2
XM_026918113.2 mRNA upstream 71723 14455329 ~ 14464598 (-) False cstf2
TU135547 other downstream 25218 14220316 ~ 14221855 (-) True G114873
trnae-uuc_1 other downstream 38086 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135100 other downstream 696298 13547512 ~ 13550775 (-) True G114460
TU134829 other downstream 1551564 12694771 ~ 12695509 (-) True G114215
TU134690 other downstream 1728879 12516358 ~ 12518194 (-) True G114097
trnav-uac other upstream 84947 14468553 ~ 14468625 (-) True trnav-uac
TU136727 other upstream 1467415 15851021 ~ 15852220 (-) True G115842
TU136942 other upstream 1685129 16068735 ~ 16071362 (-) True G116014
TU136943 other upstream 1685129 16068735 ~ 16071362 (-) False G116014
XR_004578451.1 other upstream 1723173 16106779 ~ 16115433 (-) True arr3b

Expression Profile