RNA id: XM_026917900.2


Basic Information

Item Value
RNA id XM_026917900.2
length 2467
RNA type mRNA
GC content 0.44
exon number 17
gene id hspa9
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12861650 ~ 12904853 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAGCCATGTGGTGTAAAAGATAGTTCCAGAAGCATACCGTCGGCAAGGTGGACGTCATCTACTCGTAGTGACCGTGAGGATTACTAGAACTCATTTAGGAGAAATTATTTGTAACTGCTTGCTTGGTTCAGTAATAGTATACCACACCCGTGTTTATAAATTAAGGAAAATGTTAAACGTAGCAAAAACAGTTTCACGAAACCTTTCTCCAAGCTGCGTCCGAGGTGTACCCTCTTTTGTGAAAAAGGCTTGCTGGAATAGGTTGACGGAATATGCCATTCAGACTGCATCCAGACGTGAATATGCTTCAGAAGCAATCAAAGGAGCAGTGATTGGAATTGACCTGGGGACCACAAATTCTTGTGTGGCTGTCATGGATGGTAAACAAGCAAAGGTGCTTGAAAATGCAGAAGGTGCAAGGACAACTCCATCAGTTGTAGCCTTCACAGCTGAAGGGGAGAGACTGGTGGGTATGCCAGCCAAAAGGCAAGCTGTGACTAATCCAAACAACACACTCTACGCAACCAAGCGCCTGATTGGGAGACGCTTTGATGACCGAGAAGTACAGAAAGATTTAAAGAATGTTCCATATAAGATAGTACGTGCATCCAATGGAGATGCCTGGATAGAGGCCCATGGAAAGCTGTACTCCCCTAGCCAGGCTGGGGCCTTTATTCTGATGAAGATGAAAGAGACTGCAGAGAATTATTTGGGCCATACAGTGAAGAATGCTGTTGTGACTGTACCAGCCTATTTTAATGATTCTCAGAGACAGGCAACCAAAGATGCTGGCCAGATTGCAGGTCTAAATGTGCTCAGAGTAATCAATGAACCTACAGCAGCTGCTCTGGCATATGGACTTGATAAGACTCAGGACaaggtTATTGCAGTGTATGATCTCGGAGGAGGCACATTCGATATCTCAGTCTTGGAGATCCAGAAAGGAGTTTTTGAAGTGAAATCTACCAATGGTGACACATTCTTAGGTGGTGAAGATTTCGATCAGTATCTGCTAAATCATATAGTGAAAGAGTTCAAGAGAGAGTCAGGTGTGGATCTAACCAAAGACAACATGGCATTGCAGAGATTGAGAGAGGCAGCTGAGAAGGCCAAATGTGaactttcttcttctctgcagACTGACATCAACCTGCCTTACCTAACGATGGACAGCTCTGGTCCCAAACACTTGAACATGAAGCTTACCCGTGCCCAGTTTGAGGGAATTGTGGGAGATCTAATTAAAAGGACTGTGGCCCCATGTCAGAAGGCCATGCAAGATGCTGATGTTTCTAAGAGTGACATTGGAGAAGTCCTGCTGGTTGGAGGAATGACTCGTATGCCAAAGGTTCAGCAAACAGTACAGGATCTGTTTGGCAGGGCCCCTAGTAAATCTGTTAACCCAGATGAAGCTGTGGCTATTGGGGCAGCCATCCAAGGGGGTGTATTGGCTGGAGACGTGACAGATGTGCTCCTGCTGGATGTCACTCCCCTCTCTTTGGGAATTGAGACTCTGGGAGGAGTGTTCACCAAACTTATAAACCGCAATACAACCATTCCCACCAAAAAAAGCCAGGTGTTTTCTACTGCTGCTGATGGGCAAACACAAGTAGAAATTAAAGTTTGCCAAGGTGAGCGTGAAATGGCAGTGGATAATAAGCTCCTTGGACAGTTCACACTGGTTGGCATCCCTCCTGCTCCACGTGGTGTCCCACAGATTGAAGTTACCTTTGATATTGATGCCAATGGAATTGTACACGTTTCTGCTAAAGACAAAGGCACTGGACGTGAACAGCAAAttgtcaTCCAGTCCTCTGGTGGTCTCAGTAAAGATGACATTgagaacatgattaaaaatgctgaaaagtatgcagaggaggacagaaagaggAAGGATCGTGTTGAGGCTGTTAATATGGCTGAAGGCATTGTCCATGATACTGAGTCAAAGATGGAGGAATTTAAGGACCAGCTACCCACTGAGGAGTGCAAGAAGCTTCAGGATGAGATCACTAAAGTGAGAGATCTACTTTCACGAAAGGACCTTGAGACTGGTGAAAACATCAAACAGGCTGCCACAGGTCTACAGCAAGCATCTCTGAAGCTCTTTGAGATGGCTTATAAGAAGATGGCATCAGAGAGAGAAGGCAGCACAGGCAGTTCAAGCGGAATGGAGACAGGAGAGAAAAAGGAGGGACAACAGTAGGGCCACCAAAGTGAAGGTTATCCTGGGACTGAAATACTTGGAAATGTAAACAGTCTTGAACAAGACTGACATCTTAGTCTCCATTTATTCTTACATACTGCTTTATCACAGTATCATACATTTGTTATTGTATTACCATCCTTCTGAAATTAATTTCATATGTGTCCTTTTCAAGTTACAATGAtctaattattgttattgtaatttttcTGCAGTCTGTTACTGCTTTTGTGAcctttatattaaaatttgtaaatgaa

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006457 protein folding biological_process
GO:0031101 fin regeneration biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04043 dnaK, HSPA9; molecular chaperone DnaK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003404333.2 lncRNA downstream 106175 12745982 ~ 12755475 (-) True LOC113542678
TU134842 lncRNA downstream 116263 12745135 ~ 12745387 (-) True G114228
TU134841 lncRNA downstream 116615 12744816 ~ 12745035 (-) True G114227
TU134840 lncRNA downstream 116969 12744472 ~ 12744681 (-) True G114226
TU134830 lncRNA downstream 165569 12695853 ~ 12696081 (-) True G114216
TU134902 lncRNA upstream 6846 12911699 ~ 12911903 (-) True G114284
TU134919 lncRNA upstream 107764 13012617 ~ 13012844 (-) True G114299
TU134922 lncRNA upstream 109719 13014572 ~ 13015871 (-) True G114302
TU134913 lncRNA upstream 119339 13024192 ~ 13027923 (-) False fbxo38
TU134914 lncRNA upstream 121088 13025941 ~ 13027923 (-) False fbxo38
XM_026940457.2 mRNA downstream 198701 12581456 ~ 12662949 (-) False spdl1
XM_034305918.1 mRNA downstream 198703 12581457 ~ 12662947 (-) False spdl1
XM_026940454.2 mRNA downstream 198704 12581457 ~ 12662946 (-) False spdl1
XM_026940455.2 mRNA downstream 198704 12581457 ~ 12662946 (-) True spdl1
XM_034305621.1 mRNA downstream 312357 12535685 ~ 12549293 (-) False atoh8
XM_026917725.2 mRNA upstream 29704 12934557 ~ 13027955 (-) True fbxo38
XM_026917724.2 mRNA upstream 29704 12934557 ~ 13010114 (-) False fbxo38
XM_034305916.1 mRNA upstream 29704 12934557 ~ 13010114 (-) False fbxo38
XM_026917723.2 mRNA upstream 29704 12934557 ~ 13010113 (-) False fbxo38
XM_026917728.2 mRNA upstream 39299 12944152 ~ 13010116 (-) False fbxo38
TU134829 other downstream 166141 12694771 ~ 12695509 (-) True G114215
TU134690 other downstream 343456 12516358 ~ 12518194 (-) True G114097
TU134687 other downstream 356849 12500971 ~ 12504801 (-) False timm8a
TU134600 other downstream 437593 12423728 ~ 12424057 (-) True G114013
TU134534 other downstream 499378 12332756 ~ 12362272 (-) False G113959
TU135100 other upstream 642659 13547512 ~ 13550775 (-) True G114460
trnae-uuc_1 other upstream 1304063 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135547 other upstream 1315463 14220316 ~ 14221855 (-) True G114873
trnav-uac other upstream 1563700 14468553 ~ 14468625 (-) True trnav-uac
TU136727 other upstream 2946168 15851021 ~ 15852220 (-) True G115842

Expression Profile