RNA id: TCONS_00000675


Basic Information

Item Value
RNA id TCONS_00000675
length 633
RNA type processed_transcript
GC content 0.45
exon number 5
gene id XLOC_000393
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 33383644 ~ 33487375 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTGTATCCTCGGCTTCATCAGGCTCTACTTAGATGGCGTGAAAGTCCTGCTATACCAGCTTTTCAACAAATCTTTCAGGCTGCCAGATTTGCCCGAGCAGAATGGAAAGGTTGCCATAGTTACAGGGGGAACCAGAGGAATGGGATATGAGATTTCCAGACATCTGGTCAGCCTGGACATGCATGTGATCATTGCTGGAAATGAAGAAGAGGAGGGTCTGGCAGCAGTAAAGAAGATTCAAGAAGAGTTGAATCAGGGAAAAGTGGAGTTCATGTACTTGGATTTGGCCTCTTTGACATCTGTTCGCCAGTTCGTCCAGAGATATAATGCCAAAGGTTTGCCTCTACATGTCCTTGTCAATAATGCACACACCCCTTCCATCTGATGTCGACTGATGGGCAAACGCATTTGTGCCACCCCGTTGAGGGTCTAATGATGCAGAAAGGTCAACACTTGACCCTTCTAGAGCCCCGGGTGGACAGGACACTGCATGTGTCTAAGGGACAGTCTGGAGGACAATGATTCTCTCTACAGAGGTCCTTCGTTAATGGATTGATAGCCATAGGAtgcattagtttttatttagctTCTAATTAAATGTTTAGTAAAATGTCAATCaacaaatacattat

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060620-2 Predicted to enable oxidoreductase activity. Orthologous to human DHRSX (dehydrogenase/reductase X-linked).

Ensembl:

ensembl_id ENSDART00000133870

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000651 lncRNA upstream 1383743 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002849 lncRNA upstream 1389480 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00003083 lncRNA upstream 1390064 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00000637 lncRNA upstream 1880886 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002848 lncRNA upstream 2042539 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00002850 lncRNA downstream 62570 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 242109 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00003084 lncRNA downstream 776371 34231603 ~ 34234056 (+) False XLOC_000404
TCONS_00002851 lncRNA downstream 776506 34231738 ~ 34232127 (+) True XLOC_000404
TCONS_00003085 lncRNA downstream 995427 34450659 ~ 34454447 (+) True XLOC_000408
TCONS_00000667 mRNA upstream 67126 33322555 ~ 33334732 (+) False XLOC_000392
TCONS_00000668 mRNA upstream 69797 33328857 ~ 33332061 (+) True XLOC_000392
TCONS_00000666 mRNA upstream 77382 33322174 ~ 33324476 (+) False XLOC_000392
TCONS_00000665 mRNA upstream 118169 33217911 ~ 33283689 (+) True XLOC_000391
TCONS_00000662 mRNA upstream 608214 32791920 ~ 32793644 (+) True XLOC_000389
TCONS_00000676 mRNA downstream 103323 33558555 ~ 33569245 (+) True XLOC_000395
TCONS_00000677 mRNA downstream 178954 33634186 ~ 33635304 (+) True XLOC_000396
TCONS_00000678 mRNA downstream 192450 33647682 ~ 33663705 (+) True XLOC_000397
TCONS_00000679 mRNA downstream 213004 33668236 ~ 33684216 (+) False XLOC_000398
TCONS_00000680 mRNA downstream 213012 33668244 ~ 33694795 (+) False XLOC_000398
TCONS_00000663 other upstream 185140 33215241 ~ 33216718 (+) False XLOC_000390
TCONS_00000664 other upstream 185775 33215243 ~ 33216083 (+) True XLOC_000390
TCONS_00000661 other upstream 695631 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000657 other upstream 887754 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000653 other upstream 1336828 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000681 other downstream 227999 33683231 ~ 33693904 (+) True XLOC_000398
TCONS_00000684 other downstream 279786 33735018 ~ 33735134 (+) True XLOC_000400
TCONS_00000685 other downstream 511925 33967157 ~ 33967273 (+) True XLOC_000401
TCONS_00000688 other downstream 667648 34122880 ~ 34122972 (+) True XLOC_000403
TCONS_00000695 other downstream 945008 34400240 ~ 34400354 (+) True XLOC_000407

Expression Profile

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