RNA id: XM_026940342.2


Basic Information

Item Value
RNA id XM_026940342.2
length 5515
RNA type mRNA
GC content 0.50
exon number 39
gene id thoc2
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9121034 ~ 9201135 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAAATTACGCCCCTTGACCCGTAGCGTTGCGCTGAACATCCGGGCAACAGTGTGGTGGTGTAGTGGGGAAGATGGCGGCGCTGATCCTCCCTACTGATTGGATCAAAAACTGGGAAAAATCCGGAAAAAATGAGTTCCTGCAGCTGTGTCGGGACTTGGCAGGCAAAGCCGAAGACGAAGTGTTCCTTAAAGATCTCCAGATGGCCCTGTACGAGCTCTGCTGGCACGTCGTCCACGGAGGACTCAAGGTTGACATGGCCGCCAGCCTTCTGGCTGATGTTATGGAACTGAAGGAAGAAATGCCTTCTATTTTAGCTGATGTTTTCTGTGTATTAGATATTGAGACTGGatgtttggaggagaaacacAAGCGTGACCATTTTACCCAGCTGGTGGGAGCGTGTTTGTGTTGTGTTTCGGAAGCTGTCCTGAAAGAGAGGCTCGACCCCGACACGCTCGAGTCCCTCGGCTTGATCAAACAGGCACAGCAGTTCAACCAGAAGATTGTCAAAATCAAGACCAAGCTGTTTTATAAACAGCAGAAGTTCAACTTGTTGCGTGAGGAGAACGAAGGCTACGCCAAGCTAGTGACGGAGCTGGGCCAGGATCTCTCAGGAAACGTCACCAGCCATCTTGTTCTGGAGAGCATCAAGTCTTTAATAGgaTGTTTCAACTTGGACCCAAACCGCGTGTTGGACATCATTTTGGAAGTGTACGAGTGCCGTTCGGACCAAGACGAGTTTTTCATCCCTCTGATCAAGTCGTACATGTGCGAGCACCAGACCCTGTGCCATATCCTCggcttcaaattcaaattccaTCAGGAACCGAACGGAGAAACGCCTTCGTCTTTGTACCATGTCGCCGCTGCCCTTCTCCAACACAATCTCATCGCACTGGAGGATCTCTATGTACATCTTCTCCCGCTGGACTCCTCCATCGTGGAAGAGCACAAAAGGGAGATCCTGGAGGCCAAGCAGATCGCCCGCAAGCTCACCATGGTGGTGGTTCCCTCAGAGAAGAGCGACGAtaaagaaaaggagaaggacaaagaagaggaaaagaatgaaaagCCTCCCAATAACCAGAAACTGGGCCTGCTCGAGGCTCTGCTGCAGATCGGAGACTGGCAGCATGCACAGAGCATCATGGAGCAGATGCCACCCTTCTACGCCACCTCGCATAAATCCATTGCTGTAGCACTATGCCAACTGCTGCACCTCATCTTGGAGCCTCTGTACCGCAGGGCTGGGGTCCCTAAAGGTGCTAAAGGCTGTGTGTTGAAGCTGCTGAGGAACAGGCAAGCTCCTCTTCCTGTCGAGAGTTTTGAGGATCTCTCTAAGGACGTGTTCACCATGCTGGGTTACCTGGGCCCGCACCTGTCCCACGATCCCATCCTTTTCGCCAAGATCGTGCGTCTTGGCAAAAGCTTCATGAAAGAGTACCAAAGTGAAAGCAAGCAAGATGCCAAGGAGAAAATGGACACACTGCTCAGCTGTTTCCTCAGCATTGCTGACCAGGTGCTGCTGCCTTCGCTCACGCTCATGGACTGCAACGCCTGCATGTCAGAGGAGCTCTGGGGCTTCTTTAAGCTCTTCCCTTACCAGCACAGGTATCGGCTTTACGGGCAGTGGAAAAATGAGACGTACAGCAGCCACCCGCTGCTGGTGAAGGTGAAGGCCCAGACGGTGGACAGAGCCAAGTACATCATGAAGCGATTGACCAAGGAAAACGTGAAGCCATCGGGGAGGCAGATTGGCAAGCTGAGCCACAGTAACCCCACCATTCTCTTTGATTACATTCTCTCCCAGATCCAGTGGTATGACAACCTCATCACCCCTGTGGTGGACTCTCTGAAATACCTCACCTCTCTCAACTATGATGTACTGGCTTATTGCATTATTGAAGCTTTAGCTAACCCGGAGAAAGAGAAGATGAAGCATGACGACACTACTATTTCATCTTGGCTTCAAAGTCTCGCCAGCCTTTGTGGAGCAGTTTTCCGGAAGTACCCTATCGAGTTGGGAGGTTTGCTGCAGTATGTGACCAATCAGCTGAAGGCAGGAAAGAGCTTTGACCTGTTGATCCTGAAGGAAGTGGTGCAGAAGATGGCCGGGATCGAGATCACAGACGAAATGACAGCGGAGCAGCTGGAGGCCATGACCGGAGGAGAGCAGCTTAAAGCAGAGggaggaTACTTTGGCCAGATCAGGAACACAAAGAAGTCATCTCAGCGCCTGAAGGACGCTCTGCTGGATCACGAGTTGGCTCTTCCTCTTTGCCTGCTGATGGCTCAGCAGAGGAACGGCGTGGTTTTCTCCGAGGGAGGGGAAAAACACCTCAAACTAGTGGGAAAACTCTATGATCAGTGTCATGACACGCTGGTGCAATTTGGCGGCTTTTTAGCGTCCAACCTGAGCACGGAGGATTACATCAAGAGAGTTCCTTCCATAGACGTGCTTTGTAACCAGTTCCACACTCCCCATGATGCTGCTTTCTTCTTGTCCCGCCCAATGTACGCCCATCAGATTATGGCCAAGTACGACGAGCTGAAGAAGGCCGAGAAGGGAAACCGGCAGCAGCAGAAGGTTCACAAGTACATAGCGGCGTGCGAGCAGGTGATGGCGCCTGTGCACGAAGCCGTCATCTCGCTCCACCTACCTCGAGTGTGGGACGACCTGCGTCCGCAGTTCTACGCCACCTTCTGGTCACTCACCATGTACGACCTGTCTGTTCCCCATAGCGCCTACGACCGCGAGGTCAACAAGCTCAAGATGCAGATCAAGGCCATCGACGAGAACACTGAGATGCCGCTGAACAAaaggaagaaggagaaggaaagatgTACTGCGCTGCAGGACAAGCtgctggaggaggagaagaagcagCTGGAGCATGTGCAGAGGGTCCTGCACCGCCTCAAGCTGGAGAAGGACAACTGGTTACTCGCCAAATCAACCAAGAACGAGACCATCACTAAATTCCTTCAGCTCTGTCTGTTCCCACGCTGCGTCTTTTCCGCCATTGACGCCGTCTACTGCGCTCGTTTTGTCGAGCTTGTGCAccaacagaaaacacagaacttcTGCACACTACTTTGTTATGATCGCGTGTTCTCTGATATCATCTACACAGTAGCAAGCTGTACCGAGAACGAGTCCCGGCGTTATGGCCGTTTCCTGTGCTGCATGCTGGAGACAGTGACACGATGGCACAGCGATAAAGCCATCTACGAGAAGGAGTGCGGCAATTACCCAGGGTTCCTAACCATTTTCCGAGCCAGTGGCTTTGACGGAGGAAATAAGGCGGACCAACTCGACTATGAGAACTTCAGACACGTCGTTCACAAATGGCATTACAAGCTGACTAAAGCTTCAGTGCACTGTCTGGAGACGGGCGAGTACACCCACATTCGCAACATCCTCATTGTGCTGACCAAGATCCTGCCCTTCTACCCAAAAGTGCTGAACCTGGGCCAGGCACTCGAGTGCCGAGTGCACAAGATCTGccaggaggagaaggagaagaggcCTGACCTCTATGCTTTAGCTATGGGCTACTCTGGCCAGTTGAAAAGCAGGAAAGCTCACATGGTGCCTGAGAACGAGTTCCACTACAAGGAGCCTGCGAGCACCCCCAACCCTGGCGCCCTGCAGAATGGCCCGGGCAGCTCCGGCAAGCCTGGTACTGCCACCCCTGCCTCTGCCAACACTGGAAAAAATGAGGAGGGAGCTGCCGACGACACGGACAAATCTAAGGACAAATCTCAGGTGGCTCAGAAAACGGCCTGCAAAAACCCAACCACGGCGAATAAAGCGAGCAGCAGCAACGGCAGCAGCACACCTAACAGCATCAAAGGGAGCAAAGAGAAGGAGGACAAGGAAAAGAGTGTgaaggagaaaaaggaaaagaaggagaagacTGCTGCCAGCACTCCAGAGGCCAAGGCAGGAGGGAAGGAGAAGCAGAAGGAGGAGAAAGCGGGTGATGCCAAGGACAAGGTGCCCAAGGCTGAGAAGGACAAGAGGAAGGATGACAAGAAGGATGAGAAGAGCAAGAGTGACGCCAAGGCTGCAGACAAAGAGTCATCCAAGGAGCGAGATGTGGCCAAGGAGGGCAAGCTAAAGGAAAGCAGCAAGGGCGAGAAAAATGCTGGGTCCCTCAAGTCCCCCGTTCCCAGATCAGAAGGAATCGAGTCTGATCGGGAACAAAAAAGACGAAAGCTCGACACACACTCTTCGCCCTCACACTCCTCTGCAGTTAAGGACAATCTCAATGACTTCAAGGACTCAGCCACCAAGCATCACGCCAACAACAGCACCGGCCTGACCAAGAGTGAAGCCGAGAAGAAAGAGTCCGACAAGTCCAGGGACCGCTCCAAAGAGAGGGACaagaaggaggagaggaaggacCGCAAGCGAGACTACTCCAACAGCGACCGCGAGATGAGCCAGGAAGCCAAGCGCCGCAAAGACGAGAACGGAACAAGCTCCTCAAAGCACAGTAAGAGCGCCAGTCCGCCTGATTCGCCCCGCTCCAATGACAAGGACAACAGCAAACGCTCCAAATCCACCAGCAAAGACAAGAGCGACCTAGCCAAAACCGACAAGACCTCTGGAGGCAAAAAGgaatCCAGGCACGACAAAgagaaatctgaaaaaaagcGAGACAGTACCGGTGCAAAAGAAGACAAGAAACACCATAAATCATCTGAAAAGCACAGATAATGTAACCTGACATGGACAAGaatTCCCTGTTGTGCGCTTTGATGAGTCAGAGCCCCATCCACCTTTCAGCCATGTCAGCATCTGcattctctttttcctctcactgtctGAGCTGAGGATTTGTTTGCACCCTTGTATTTTGGCTTGCCTAGATAATTTCCTAGAAATGTCGTAGCTTGTATTTTAACCTGCCATTTTTTATTGTAACATTTTCAGTACCATGCTGAAAGTTCGTTTCTGTAAAATTTTAGCACAATGTGCTGCTGTATTTCACAAATGGAATCGGGGTCAGAATTGTGTTGCTCCTGAATTGGattgcatttttataaacagtcaacactttttttttttttgtttttggtttgttttttttttttttttttttttgagcaaacAAAATTCATCACAGCCTCAGTTTGATttccagtttatttatttttctcttccttttaaTCCGTATGCGATATTTAGGCATAGGTGTTTAAAGCAGTATGAACAGTCtatttgtatattatgtatacattaaataaaatggataCTTGTAATACATAATTTCCTCAACTTTTATTTCAAGAGTAAGTCGCCTAAACTCCTCGTTGTGTttgcttacatttttaaaaaaaggatttctATAGAAAGAATTGCAAGCTCGATTTCTTCCTGAATAAATGgactacataaaaaaaagtgttaatctCTTTGAGAACTACTTTTGGAGTTTTTAAAATGCCCTCACGTCGACCAGTGTATGCCTTTTTCTAAATaaagatagtttttttttttccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132217 lncRNA downstream 11146 9103144 ~ 9109888 (-) True G111885
TU132127 lncRNA downstream 117187 8943483 ~ 9003847 (-) False LOC113542737
XR_003404340.2 lncRNA downstream 117221 8976406 ~ 9003813 (-) False LOC113542737
XR_003404339.2 lncRNA downstream 117253 8976406 ~ 9003781 (-) False LOC113542737
XR_003404338.2 lncRNA downstream 117257 8976406 ~ 9003777 (-) True LOC113542737
TU132230 lncRNA upstream 38293 9239428 ~ 9251750 (-) True G111896
TU132249 lncRNA upstream 54587 9255722 ~ 9257981 (-) True G111911
TU132251 lncRNA upstream 58339 9259474 ~ 9259729 (-) True G111913
TU132284 lncRNA upstream 136739 9337874 ~ 9338326 (-) True G111939
TU132286 lncRNA upstream 139782 9340917 ~ 9342053 (-) False fgf16
XM_026940522.2 mRNA downstream 316303 8649464 ~ 8804731 (-) True nlgn3a
XM_026940523.2 mRNA downstream 316305 8649464 ~ 8804729 (-) False nlgn3a
XM_034306018.1 mRNA downstream 375192 8649464 ~ 8745842 (-) False nlgn3a
XM_026940703.2 mRNA downstream 490985 8624773 ~ 8630049 (-) True pcdh20
XM_026940705.2 mRNA downstream 490991 8624773 ~ 8630043 (-) False pcdh20
XM_026940383.2 mRNA upstream 139238 9340373 ~ 9347934 (-) True fgf16
XM_026940568.2 mRNA upstream 209713 9410848 ~ 9424114 (-) False LOC113542799
XM_026940567.2 mRNA upstream 209713 9410848 ~ 9424112 (-) True LOC113542799
XM_034305630.1 mRNA upstream 368979 9570114 ~ 9575347 (-) False irg1l
XM_026940357.2 mRNA upstream 368979 9570114 ~ 9575347 (-) True irg1l
XR_003404370.1 other downstream 638971 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 3292476 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 3323098 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 3432195 5687579 ~ 5688839 (-) False zgc:113229
TU129845 other downstream 3903015 5204762 ~ 5218019 (-) True G109827
XR_003404336.2 other upstream 386693 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404347.2 other upstream 2058974 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 2158003 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 2410838 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 2617743 11818878 ~ 11858016 (-) True G113674

Expression Profile