RNA id: XM_026940344.2


Basic Information

Item Value
RNA id XM_026940344.2
length 1508
RNA type mRNA
GC content 0.40
exon number 8
gene id LOC113542679
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10384311 ~ 10397034 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTAGCCGGAAGTAGCGGACGCTGCCTTGTTGTCAGGGAACATCAAAACAAGACGCCGCCGCGCATCTTCAAGCACTTAACGTTATCTGCACCACTGACACATGAGGCTTGTTCATTAACGGTTACTGGAAATATCAGCTGAAGATTCAGACATGTCAAGTATGGAAAAACATCTTTTCAACCTCAAGTTCGCCGCCAAAGAGCTAGAACGTAATGCAAAGAAATGTGACAAAGACGAGAAGGCTGAAAAAGCTAAAGTGAAAAAGGCTATACAAAAAGGTAACATGGAGGTAGCACGTATACATGCTGAAAATGCAATCCGACAGAAGAATCAGTCAATCAACTTTCTCCGCATGAGTGCTCGAGTGGATTCAGTGGCTGCTCGAGTCCAAACTGCTGTTACCACTGATAAGgtcACCAAGTCCATGGCAGGTGTGGTTAAGTCTATGGATGCTACACTGAAGAGCATGAACTTGGAAAAGACTTCCTCTCTTTTGGACAAGTTTGAGCGCCAGTTTGAAACATTggatgtgcagacagcacagaTGGAAGACACTATGGGCAGCACAACCACACTGACCATGCCTCAGAATGAAGTGGAGTCTTTAATGCAGGAAATGGCAGATGAAGCTGGGTTGGATCTGAACATGGAGCTGCCTCCAGGACAGACAGGTTCTGTTGGCACCAGTGTAGCAACAGCTGAACAGGATGAGCTTTCTCAGAGACTGGCCAGACTACGAGACCAAATAGAGTGATGTCAACGTTTATGTACATGGGGAAGATGATGTAAGGAGTATATGTGACTGCCCGCCAGTAGAAAGGTACTGGCTCATGAAAAGCATTAAAGCTGACTTGTGCAAATAAGTACACACCTCTTTGCCTCATGATGGCGCTAATGAGAAGGAACCTGCAGATCACACAATGGTGAGAGGGAGATTCCTCATGTCTTTCCTTGGTATCAAGAACTGTACAAGGGATGTGCAATGGAAAATATTTGCACTGCGTGTTTTGTCCTTCCACTGTGTTTAGCATATGTATATTTTCATCTATACAACTATATGACTGAAGAAAGTGCAGACATTTGCCATGATTATGCTGCTTATAAATACATTATGTATGAAATGCTGGATGTTGAAAATGTTGCACTGGCTAATGCTTTGCAGTggctaaatgttaaaaaaatatttgtattggGATTAAATCTGTTCTTAAAGAATGGTTCcatgtttcttaaaaaaaattctctgatGTTAGTATGAAGCATCTCAAACAGTATTGAAGCAATTCTCTAGACAAAACTTCTAACTGGAATTGCATTGGTATTATCATATCATTGGTATTATCATATCATAATCATATTCCATTATTTCAGGTTTATATGCATTTGTACGTATAAGATCTGTTTCCCTGTTACTGTGCTTTAAATGGTGATTTTACAACTGctggtttatttattactgcatcttactaaaatttaattcagttcaaacTGCTTAATAAACTACTAAT

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005829 cytosol cellular_component
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12197 CHMP1, VPS46, DID2; charged multivesicular body protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133096 lncRNA downstream 30407 10353705 ~ 10353904 (-) True G112651
XR_004578481.1 lncRNA downstream 142802 10234819 ~ 10241509 (-) True LOC117597733
TU132995 lncRNA downstream 159660 10223944 ~ 10224651 (-) True G112569
TU132886 lncRNA downstream 381319 10002779 ~ 10002992 (-) True G112473
TU132869 lncRNA downstream 413662 9970377 ~ 9970649 (-) True G112459
TU133142 lncRNA upstream 48615 10445649 ~ 10445952 (-) True G112689
TU133143 lncRNA upstream 51365 10448399 ~ 10448613 (-) True G112690
TU133144 lncRNA upstream 51621 10448655 ~ 10448962 (-) True G112691
TU133207 lncRNA upstream 98264 10495298 ~ 10506943 (-) True G112745
XR_003404353.2 lncRNA upstream 418714 10815748 ~ 10843208 (-) False LOC113542794
XM_026940490.2 mRNA downstream 49771 10326781 ~ 10334540 (-) True LOC113542757
XM_034305889.1 mRNA downstream 150840 10225121 ~ 10233471 (-) False cysltr1
XM_026940480.2 mRNA downstream 154528 10225121 ~ 10229783 (-) True cysltr1
XM_026940479.2 mRNA downstream 160771 10175648 ~ 10223540 (-) False LOC113542752
XM_026940799.2 mRNA upstream 61789 10458823 ~ 10462934 (-) False hmgn6
XM_026940800.2 mRNA upstream 61789 10458823 ~ 10462934 (-) True hmgn6
XM_026940499.2 mRNA upstream 229506 10626540 ~ 10662608 (-) False rps6kal
XM_034305929.1 mRNA upstream 229506 10626540 ~ 10662608 (-) True rps6kal
XM_026940500.2 mRNA upstream 229506 10626540 ~ 10649834 (-) False rps6kal
XR_003404336.2 other downstream 790986 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 1902248 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 4555753 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 4586375 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 4695472 5687579 ~ 5688839 (-) False zgc:113229
XR_003404347.2 other upstream 863075 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 962104 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 1214939 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 1421844 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 1711810 12108844 ~ 12112201 (-) True LOC117597634

Expression Profile