RNA id: XM_026940393.2


Basic Information

Item Value
RNA id XM_026940393.2
length 3529
RNA type mRNA
GC content 0.47
exon number 8
gene id znf711
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9905958 ~ 9917165 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGGGATTCTGGATGTACAGGCCGCAGATGCGCTACGGCtggaaaataaaaccaaaaccgGATTATGATGTATTCGGTACAATAAGAAGGGCGTTGGCGCACCAAAGACGAATCAACGGACCAGGTCTTTTCCTCCCAgatgactgacacacactctctctctcacacacacacacacacacacacacagtgttgctTAATAGTTGGCACGTTTATGTGtattaaatatacagtcagCAAATGTGAAGGTATGTCTAAATTTCTTTTTATGAGGGATAATAACATTTGCATCTAAGATACCTGTCTCAGTTCCAGCCCGTCGTGACTATCACatttcctctgtttttctcttttatgtTTATTTCCACTTTGGTTAATTTtagcattgtaaaaaaaaaaaaaaaaaaaaatccaagaaaaTGGATCAAGGAGGAGGGGTCTTAGAGCTTCACTCCCAGGATTTGAAAATGCCCCACACAATGATAATGCAGGACTTTGGCATGGGGGGCATGGCCCACATAGACGGTGAACACATTGTGGTATCGGTACCCGAAGCTGTGCTGATATCAGATGTGAATACTGATGAGGGCATCCTGCTGGAGCATGGCCTGGAGGCTGAAGTGGTGGAAGGGCCTGGTATTGGCCGAGAGGATGTCATCATGTCTGAGTCCATCCTGGGAGCAGAGGTGGCCATCGAGGAGGCTCTGGACGCCGACCACCATGTCCTGGCTGCCGAACTTATCGAAGAAACAGTGCCTGAACAGGTGTTTGTGACCGATCTAATGTCCACACATGAGGACAGTCCACTGGACCCTGAGCTGGTGTCAGAGGAGGTGATGGTCGCGGACACGGAGGCCATAGTTCAGGCACACGAGACCACGCCACCCTGTGCGACCCTTAAGACTGATGACGACGACGATGGCAAGAGCACCTCGGAAGACTACCTCATGATCTCATTGGATGATGTGGGGGAGAAGTTGGATATTGGTGACACACCATTAAAAATCAGCACAGGGGTGGGCCAGGATGATGAATCCAAGGAGGATGAGTTTGGCTCTGAGGTTATCAAAGTGTACATCTTTAAGGCCGAAGGGGATGAAGATGTGGAAATAGGTGGAACGGAGGTTGTTGCAGAGAGTGATTTCCCCAACGGGCATGCAGTGTTAGAGCCAGCAACAGCAAGCATAGGTCGAATGCCCAGGGAGAAAATGGTCTACATGGCAGTGAAGGATACGAGCCAAGGACAGGAAGATATGAATGTATCTGAGATGACTGACCAAGTATACATGGAGGTGATTGTTGGGGAAGATGAGGCTCCTGCCATACAAGAAGCACAACTGGAGGATTCGCCATCTAATAAGACCTTTGTTCCTGTCGCATGGGCAGCTGCCTATGGTAACAATCTGGAGTCTCATTTAGAGAGTAAGCATGGTGCAACCACTCCATACCTGCAAATCAGTGACAGCATCAGTACAAGCCGCGCTCTCAAACAGAGgatcaagaagaagaagaagggagaGACACGGCAGTGCCAGACTGCTGTAATAATTGGCCCTGACGGCCTGCCACTGACGGTCTATCCTTGCCACATCTGCGGCAAAAAGTTCAAGTCACGCGGGTTCCTGAAGCGGCACATGAAGAACCACCCAGACCACATGTTTAAGAAGAAGTACCAGTGTACAGACTGTGATTTCACTACTAACAAGAAGGTCAGCTTTCACAACCACCTAGAGAGCCACAAGCTCATCGTCAAGAACGAGAAAGTCCCAGAGTACACAGAGTACACGAGGCACTACCGGGAGGCGAGCCCACTCAGCCCCAACAAGCTGATCTTACGTGACAAGGAACCCAAGCTGCACAAGTGCAAATACTGCGAGTATGAGACGGCTGAGCAAGGCCTGCTCAACCGCCACTTGCTGGCTGTGCACAGCAAAAACTTTGCGCATGTTTGCGCAGAGTGTGCCAAGGGCTTTCGCCACCCGTCTGAACTCAAGAAGCACATGCGGACACACACGGGTGAGAAGCCCTACGGCTGCCAACGCTGCGACTTCCGCTGTGCTGACCCATCCAACTTAAAGACTCATGTAAAGAGCAAGCATGGCGCCGAGCTGCCGTTTAAGTGTGCTCACTGCCCACAGGCGTTCGCTGATGACAAGGACCTGCAGAGGCACATGGAGGTTTTCCAGGGCCACAAGACTCACCAGTGcccacactgtgagcacaaGAGCACCAATTCGAGCGACTTGAAGCGCCACATCATCTCTGTGCACACCAAGGACTTTCCACACAAGTGCGACGTGTGCGAAAAAGGCTTCCACCGGCCATCAGAGCTCAAAAAGCATGCGGAAACGCACAGGGGCAACAAGGTGCACCAGTGCCGGCACTGTGACTTTAAGATCTCAGACCCTTTCACTCTGAGTCGGCATATCTTGTCCGTGCACACAAAAGAGCTGCCTTTTAAATGCAAACGCTGCAAGCGTGGCTTCAGGCAGCAGACCGAACTTAAGAAACATGTGAAGACTCACAGTGGCCGTAAAGTCTACCAGTGCCAGTACTGTGAGTATAACACAGCGGATGCCTCGGGTTTCAAACGCCACGTAATCTCCATCCACACTAAGGACTACCCACATAGGTGTGACTACTGCAAGAAGGGTTTTAGACGGCCCTCTGAAAAGAATCAGCACATAATGCGCCATCACAAAGACACACTGATATAACACTCCCCCCTCCAACCTCGTAAACTAGAACCTAATTTACACAACAGAAGATGAGAATGGAATGGTACAGTTCAGTCGGGTAATTGCTCTTTACTTTTTCCCCCTGCAGGTTTTTGTAAAGGCTGTTCAAATAACCTCAGTGTACTATCCCCATTCTTGGAGCAGGATTGCTAGGGTCAGCCAGGGTCTCAAatcattatatttttgtatcTACCTGGCTAAAATGCTGCAAGTGAATAATGTCCTCAAAGTTAATTGGGTAATTAAAGCTTGAAATATATGCTGTGATTCAAAAGAAATGACCATTATGACCCTTAGGATTCCCTGTAGCCATGTTGGTGTGGGCTGCAGTGTACTCTCTCAGTGAGTACTAACTAGTGTGCCTAGCTTatatgctaacatttttttaacaccagTCTAAATCATGTCATTGGTTTCAGTAGATCATTTGTGGTATAAATTATctccatttttttatgtttacttATGTACAACTCATAAGTAAACATGTATATTTGTGCATAGGGGTATAGTTACATGCTCACTTATACTTAAATATATCTCTATAACACCAACCAGTAAATTTTCTTACCCAGGATTTTTGGAGATTGAATTCACTTTAGTTTGAATTAAACCTTTTTTAGTTGTCTCCCTTGTGAATGCCGCTGCaagtaatgtatatgtataatcaCATGTAACTGGCAAATGTGCACATATTGTCATTTTGAATTCCAATTTGCAGTCATGCCTTACCTGTATTGTATTTTTCTTGCACTGAATTCAGTAAATtgaatgtgattattattttttaa

Function

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0060388 vitelline envelope cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132549 lncRNA downstream 199726 9705937 ~ 9706232 (-) True G112161
TU132527 lncRNA downstream 352280 9553026 ~ 9553678 (-) True G112144
TU132524 lncRNA downstream 354906 9550812 ~ 9551052 (-) True G112141
XR_003404367.2 lncRNA downstream 418889 9481256 ~ 9487069 (-) True LOC113542930
TU132387 lncRNA downstream 505379 9400354 ~ 9400579 (-) True G112026
TU132856 lncRNA upstream 42736 9959642 ~ 9963979 (-) False tmsb1
TU132864 lncRNA upstream 47801 9964707 ~ 9965338 (-) True G112454
TU132863 lncRNA upstream 48879 9965785 ~ 9967443 (-) False LOC113542827
TU132869 lncRNA upstream 53471 9970377 ~ 9970649 (-) True G112459
TU132886 lncRNA upstream 85873 10002779 ~ 10002992 (-) True G112473
XM_026940387.2 mRNA downstream 290797 9604625 ~ 9615161 (-) True si:ch211-153b23.7
XM_026940633.2 mRNA downstream 304032 9598787 ~ 9601926 (-) True zgc:174917
XM_026940632.2 mRNA downstream 304035 9598787 ~ 9601923 (-) False zgc:174917
XM_026940386.2 mRNA downstream 312633 9587335 ~ 9593325 (-) True si:ch211-153b23.4
XM_026940357.2 mRNA downstream 330611 9570114 ~ 9575347 (-) True irg1l
XM_034306159.1 mRNA upstream 1467 9918373 ~ 9946526 (-) False zgc:66447
XM_026940657.2 mRNA upstream 1467 9918373 ~ 9946526 (-) True zgc:66447
XM_026940603.2 mRNA upstream 42670 9959576 ~ 9964000 (-) True tmsb1
XM_034305669.1 mRNA upstream 49874 9966780 ~ 9973795 (-) False LOC113542827
XM_026940612.2 mRNA upstream 49874 9966780 ~ 9973793 (-) False LOC113542827
XR_003404336.2 other downstream 312633 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 1423895 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 4077400 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 4108022 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 4217119 5687579 ~ 5688839 (-) False zgc:113229
XR_003404347.2 other upstream 1343203 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 1442232 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 1695067 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 1901972 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 2191938 12108844 ~ 12112201 (-) True LOC117597634

Expression Profile