RNA id: XM_026940396.2


Basic Information

Item Value
RNA id XM_026940396.2
length 1390
RNA type mRNA
GC content 0.43
exon number 3
gene id asb12b
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 11368194 ~ 11371193 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAATTAGCTCCTTTTGGTGGCCAGGCCTCATGGACTCTCTGTGTCAAACTGTCACCTTTGTCTGCTTCAACTTCTGTCTGTTAGAACACAAAACTGTTCAGTTAGCTTGCCTTGTGACTCCACAGTGGATGACGGTAAAAGTAACAGTTTGGAAACTATTCAAAAACTTTGGGCTACAATTTACTCTCTTGGAGctTTGTGCTGCTAAAAATTATAATGGAGCCTTGACAAGTTTTCCAAAGCATTCCACCAAAATGAGCTTAATGGACATTACCAAGATATTCTCTCTCCTCCAACCCAAAGAGGATGAAGAAGATGGCTGTCAGCAGTTAAATAAGGCCATTGCTGAAGATGATGACAAACTTCTGGCTGATCTGCTCTCTCAAGAAGGCTACAGGAGATGTATCAATAGCAGAAGTGGCTGGGGAATACCAAGTACACCACTAAAAACTGCGGCCGCTCATGGTCATCTCCGCTGCCTGGAGTGCCTTTTAGCCCATGGCGCCAAGGTGGACAGCCTGGATGTGAAAGCCCAGACTCCGCTTTTCACAGCTGTCAGTGCCAAACACCTTGGCTGTGTCTCTGCTTTGCTCAAAGCTGGTGCTGATCCTAATGGAAGCCAATATAACAACTGCTCTCCAGTGCTAACTGCAGCCAGAGAGGGAGATGTGGACATTTTGAAGGAGCTGCTGTATTACGGTGCTGAGACAGATGTCCGAGCCAAAGTTCCAGACTGGGCTTCCAATGCCACAACATGCCGAGGGCCTCTCTACATTGCGGCCATTTACGGACACCTGGAATGcttcaagctgctgctgctacatggtGCCGATCCAGACTACAACTGCAAGGAGGAGAAACTATTGGCAAAGATCAAACAGTCAAACACAGTGCTGGACACATGTCTCAAATATGGGTGCCAATCTGAATACATTCAGCTCCTTATAGACTTTGGAGCCAACGTCTACATCCCAATGGTGATTATGGACAAAACAAGAGAGCAAGATGAGGCTATCATGCTGCTGCTTAGAGAAAGAGCTTTCCCCAAAACACTGATGTCTCAGACTCGGCTTGCAATACGGAAGTACCTTTCTATTGCATCCAAACTGGACTTGATTGATAGGCTGGATATTCcagaaatgctgaaaaattATGTGAAACATATCACATGACCTACGCTTTatgccctctctctctgtgttagcTTAAGTACTATAAATGTTAGGTAGGTCATGTACTACCACTGTATATTGTAGCTTTATATTTATGTTGTTATACAGTTCACTGGTAATCAAAGTTAAGATTGTAGAGTAtatgtattacacacacacacacatatatatatatatatatatatatactgtatatatatgtgtgtgtgtgtatat

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K10334 ASB12; ankyrin repeat and SOCS box protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133903 lncRNA downstream 145522 11222450 ~ 11222672 (-) True G113369
TU133669 lncRNA downstream 224346 11142673 ~ 11143848 (-) False G113167
TU133672 lncRNA downstream 226911 11131802 ~ 11141283 (-) True G113167
TU133782 lncRNA downstream 273892 11094096 ~ 11094302 (-) True G113277
TU133753 lncRNA downstream 313073 11054782 ~ 11055121 (-) True G113248
TU133954 lncRNA upstream 79110 11450303 ~ 11450654 (-) True G113415
TU133956 lncRNA upstream 82378 11453571 ~ 11453825 (-) True G113417
TU133998 lncRNA upstream 102166 11473359 ~ 11473649 (-) True G113455
TU133999 lncRNA upstream 102982 11474175 ~ 11475070 (-) True G113456
TU134063 lncRNA upstream 239243 11610436 ~ 11610971 (-) True G113517
XM_026940469.2 mRNA downstream 42726 11258451 ~ 11325468 (-) False LOC113542749
XM_026940466.2 mRNA downstream 42726 11258451 ~ 11325468 (-) False LOC113542749
XM_026940463.2 mRNA downstream 42726 11258451 ~ 11325468 (-) False LOC113542749
XM_026940464.2 mRNA downstream 42726 11258451 ~ 11325468 (-) False LOC113542749
XM_026940462.2 mRNA downstream 42726 11258451 ~ 11325468 (-) False LOC113542749
XM_026940584.2 mRNA upstream 17309 11388502 ~ 11398896 (-) True LOC113542810
XM_026940470.2 mRNA upstream 110698 11481891 ~ 11543724 (-) False LOC113542750
XM_026940471.2 mRNA upstream 110698 11481891 ~ 11543106 (-) False LOC113542750
XM_026940472.2 mRNA upstream 110698 11481891 ~ 11530974 (-) True LOC113542750
XM_026940548.2 mRNA upstream 654588 12025781 ~ 12063137 (-) True hdac3
TU133937 other downstream 8615 11359138 ~ 11359579 (-) True G113398
XR_003404347.2 other downstream 42726 11260109 ~ 11325468 (-) False LOC113542749
XR_003404336.2 other downstream 1774869 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 2886131 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 5539636 5826230 ~ 5828558 (-) True G110290
TU134062 other upstream 240780 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 447685 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 737651 12108844 ~ 12112201 (-) True LOC117597634
TU134531 other upstream 950138 12321331 ~ 12350528 (-) False G113959
TU134534 other upstream 961563 12332756 ~ 12362272 (-) False G113959

Expression Profile