RNA id: XM_034305859.1


Basic Information

Item Value
RNA id XM_034305859.1
length 4603
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC113542749
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 11258451 ~ 11325468 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTTCATTGTCTTAAGGGCGAGAGTTCAGCAATTTTACTGCTGACTATTCTTCGGAAAAGCGGACATTTTAAGTACTCCAGCCTCGAGGGGAACTTGAAGATTTAGCTATCTTGAGCgctatatattataaatacaaataaacactaaatatgGGTCTTCAGTGCTGCTAGCAAAGTTTATCATCTCGCTACTCTTCGGAGGTAGGACTGACTTTACACATCTGGCATCCTGATGGCAAGACTTACCTGAGACAATCAGGTGGACCACAAAGATGTCGTCTCTTACAGCTGAAAGCTGACATCATACCTTGTCAAGAGAATGGATAACATAGAAAGCTCTGTGTCTGATTGTAATGTTTCGAATGGGTATGTCAACAAAGTCTTCAGTGTGTCTCTGGACATGGAGAGTGAAACAGGGATTGTGCAAATCCGCAAATCCAAGGATCTTAAGGAATCACTGGATCTGGCCTCCTTTCAGAATCCaatcagagagaaagaagaactgAACCGAGCATCCAAAACCACAGGCATCTGGAGGATTCTCAACCACCGGAGAATTGCCTCTGACTACGAGAGACGACCTCACTCCATGATACTTCCAGGGGAAGCATCTGCCTCCAAGCTCTCATTTACTGACAAAGTAAGAGGCTTCAAAAAGTTGAAGTCCCCTTCTGTCTTCAGAGGCAAATCTGGCAAGCTTGCCAGTGCCAAGTTCCACAGTGCACTTAAGGCTGAGACAAATGAAGACAGCAAGAACTCTCCTGCTTTGTTACACTCCCAGAGGAACATACTCAGAAATAAAGGCAAGAGGCACTCGTATGCAGGTTACACTACCGAGTTTGATTGCTCTTTTGAAGATATAGACTTTACTACTACAGTTGAGACTGATCACCAATTACCTAAGAACACAGTTAGGCAACAAAGCTGTTTTAAgactcacacatgcacaaagaAAGCTCACACAAACTGCAACAACTCAATTGTGACAGTCCATGAAGAACACTTTGTGAAAGATAGCCCCAAGGTACCTCTAGGAGGAAGACAGTCAAAAGGAAGTGATGTTTGGAATTACTTGAAAAGAATTTCCTTTATCGGAAAGGGAAGTTCAACTTTGTTGGAGAAGAGCTTTGACTCCATGCACACACTGGACAAAACAATCGACTCAGACTACGGCTCTGTTGACATAGAGTGCATTAAAGACTCCATGCCTGTACCTAAACAGACAGGTCCAGATGTCAAAAGCAGCCACTTTAGGGGACTGTTTAGGTTCTTTAACAGCATGGCTGAAACTGCtcgaaaatggaggaactcatCCAGACCCTTCTCACCTCCTGAAGGTGAATGCCCCAATATTGGCTCAGCAAGAACACAACAGATTCAAGAATTTCATCACACTAAAGCTAATGCACTAAAGAGAGAAGATGAGGCTTTCACTAAGACTGCCTTTACCCCTGACGTATGTGAGGTGATCTCACCTGCTGAAGTTTTAAACAGGTCCCCACATGTGGTGCCGAAATCCTGGAAAGCATGGCCAGACTCGTCAAGCACTAATGGATTCTCCGATGGGACAGAATCACAACACACCTCCACTCACACCTCTCTTGCCACCATTGAGAACCACCAGAGAAGCGATGGCCAAGAAGGAAGTTCTCTGTCTGAGCCTGAGCTTCAGTTTGACCTACATGAACAAAGTGAATCTGAGTCTTCTGGCATCTCAGATAAAGCCAAAGGACAGACAAATGGTGAAAAAAGGGGTATTTGCAGTGATATCATTCCAGACTGTCCAGATGAAATATTTAAGGTCTCAGCAGGTGGCTGTTGTATGAGTGAGGGAAGTCCAGGAAGCTTCAGAACCTGTAGAACAATGAGATTGTCCCTTATGAAAAAGCCTTGGCACTGGCCTGCTTCAGACTATGTGATCAGGCCAAGCTTTAAGTGTCCCATCATAAAGGAGGGGGTTATCTCCTCTGGATTGGAGGAGCACTGTGCACCAGTGCTTCAGCCACCAGTTTCAAGGATACCTAATCCTCTCAGGAGACCCTGCTCTTTCGTAGAGGGATGTGCTCCCATCCAGCTTGACAGAGTACCAGCGCACCGAGCCCTTTCTCGCCCTCCTGGCATGTCACCTCAAGACCCTCCTTTTAAAGTGGTCCTGCAGAGGTCCCATTCACTTCCTCTTCCGCAGAATGCCATGTCTGGGTCAACGGTAGCCAGCTTGCTGCTAGACCAAACAGCTGAGTCTGTTAGACAATCAGCCACTGTCCAGAGCAGCAATGGAAGCACAAGTCGGAGAAAATTGCTCAGACCTGGTTCTGGACCTCTGCAAGTGAACGTGCTGATCAGCGGAGGGTCCATTGTCAGCGCTGAGGCAGTATGGGATCATGTGGCTATGGCTGACCGCGAACTGGCATTTAAGGCAGGAGATGTCATTAAGGTCCTGGATGCCTCCAACAAGGATTGGTGGTGGGGGCAGATTGATGATGAGGAGGGTTGGTTCCCAGCCAGCTTTGTGAGGGTTGATCCTCACCCTCCTCAACCCCAAACAAAACAGGTTTTCTATATCAACCCTATAGCCACTCGAAGGTTCCAAATCACAACAGCAAAGCTGTGGGTGAACCAGGAAGATCGTGCCATAGAAGCAGCTGAGGGCAGCAGTGAGGTCCAGAATGGGCACCTGGATGCAGGTAGTGACTGCCTCTGCCTGGGTCAGCCTCTCCAGAACAGAGACCAGATGAGGGCTAACGTCATCAATGAGATCATGAGCACAGAACGTCACTACATCAAGCACCTGAAAGATATATGTGAGGGTTACTTAAGGCAGTGCAGAAAGAGGATCGACATGTTCAACAATGACCAGGTAAAAGTCATTTTTGGAAACATCGAGGACATCTATAGATTTCAGATGGGATTTGTTCGGGATTTGGAAAAGCAGTATAACACAGAGGAACCCCATCTGAGTGAAATAGGTCCATGCTTCCTGGAACATCAAGATGGGTTCTGGATCTACTCTGAATACTGCAACAACCATCTGGATGCATGTATGGAACTGTCTAAGCTGATGAAGGATGGACGCTACCAGCACTTCTTCGAAGCATGCCGTCTCCTGCAGCAGATGATTGACATTGCAATCGATGGCTTCCTGCTGACACCAGTACAGAAGATCTGCAAATACCCACTGCAGTTGGCTGAGCTGCTCAAATACACAGCTCAGGAGCACAgTGACTATCGCTATGTGGCTGCAGCATTAGCCGTCATGAGGAATGTGACCCAGCAGATCAATGAGCGCAAGAGGAGACTGGAGAACATTGACAAGATTGCTCAGTGGCAGGCTTCTGTTCTGGACTGGGAGGGTAATGACATTTTAGACAGAAGCTCTGAGCTGATCTACACAGGTGAGCTGTCCTGGATCTACCAACCTTATGGAAGAAGTCAGCATCGAGTGTTCTTCCTCTTTGACCACCAGCTGGTGTTATGTAAAAAGgatctcattcGGCGTGACATCCTTTACTACAAAGGTCGCATTAACATGGACAGGTATGAAGTGAAAGATGCAATTGATGGATGGGACGATGACTTCAATGTTAGCATCAAGAATGCATTTAAACTGCACAACAAGGACACAGAGGAGATCCACATCTTCCTGGCCAAAAAATTGGAGGAAAAGATTCGCTGGCTTAGGGCATTTCATGAAGAGCGGAAAATGGTGCTGGAAGATGAAAAAATAGGCTTTGAAATTTCTGAATATCAGAAACGGCAAGCTGCCATGACAGTGCGTAAGGTGACCAAACAGAAAGTATTTTCTTGAATTTGCAGATTCATTTATAGATATCATCTTGAGAAAGAGGGCCATATTATATGGACATGGTATGAAAATGATAAAGGTATATTTATAAGAGTTTTCTGTAGAGTTAACTTTTGTCCAAGATGCCATGGCAACTGCTTTGAAAACAACTCTTAAATTTATGGAGCAAACTGGGTACCAACAACAAAGCTATTGCTGATGTGGCAAAATGGCAGTAACACTAAAGCTATTGTGATGCGGTCATGAATATATTCTTGGACTTACATGAAATTTAAGATAGATCCGTGGAATTTAAGATGCACAGATAACTGAATACAAGGTCCTTAACCATCCTAAAACAGAAAGATTGTCTTATTTCAAGATGCCATGGCAACTTCTTAAAAAAGTAGCCACAAATATCAAATGTACCAGTTAGTATTAGTTCCAGATGCAGCATATATTGGAATATGAAGATGTATATTTAGCTTGCATCGACACTTAATAATTATGGAGGTTTTTCCTCTTCAGATTTATCAGTAGTGTTGCCATGTATCTGTACATGTATTGTAAGCTAGGAGAAGCATGAATAGTGTTAGTTGGACAATGGCATTGGTGGTTTTGGTTGTGTAAGTAATAATTGTCCACTTTGTCTTTTTTGCACTCCCCTTCTTCCCTCTTCATCTTTGCTGGTCAGCTCTGAGTCCAAATAGGTGTGTGCCCCATTCATCACCTTGCCCCCAGGAGCCTATAGCCAAAGGACAGTTTGCATCCACCGATGACTTGGCACAATCCAACCTATTTAAGATTCATCAACTTAGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133903 lncRNA downstream 37419 11222450 ~ 11222672 (-) True G113369
TU133669 lncRNA downstream 116243 11142673 ~ 11143848 (-) False G113167
TU133672 lncRNA downstream 118808 11131802 ~ 11141283 (-) True G113167
TU133782 lncRNA downstream 165789 11094096 ~ 11094302 (-) True G113277
TU133753 lncRNA downstream 204970 11054782 ~ 11055121 (-) True G113248
TU133954 lncRNA upstream 124835 11450303 ~ 11450654 (-) True G113415
TU133956 lncRNA upstream 128103 11453571 ~ 11453825 (-) True G113417
TU133998 lncRNA upstream 147891 11473359 ~ 11473649 (-) True G113455
TU133999 lncRNA upstream 148707 11474175 ~ 11475070 (-) True G113456
TU134063 lncRNA upstream 284968 11610436 ~ 11610971 (-) True G113517
XM_026940426.1 mRNA downstream 160701 11091697 ~ 11099390 (-) True LOC113542731
XM_026940521.2 mRNA downstream 218677 10900021 ~ 11041414 (-) False LOC113542771
XM_026940520.2 mRNA downstream 218677 10900021 ~ 11041414 (-) True LOC113542771
XM_026940554.2 mRNA downstream 577161 10666316 ~ 10682930 (-) False hdx
XM_026940396.2 mRNA upstream 42726 11368194 ~ 11371193 (-) True asb12b
XM_026940584.2 mRNA upstream 63034 11388502 ~ 11398896 (-) True LOC113542810
XM_026940470.2 mRNA upstream 156423 11481891 ~ 11543724 (-) False LOC113542750
XM_026940471.2 mRNA upstream 156423 11481891 ~ 11543106 (-) False LOC113542750
XM_026940472.2 mRNA upstream 156423 11481891 ~ 11530974 (-) True LOC113542750
XR_003404336.2 other downstream 1666766 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 2778028 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 5431533 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 5462155 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 5571252 5687579 ~ 5688839 (-) False zgc:113229
TU133937 other upstream 33670 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 286505 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 493410 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 783376 12108844 ~ 12112201 (-) True LOC117597634
TU134531 other upstream 995863 12321331 ~ 12350528 (-) False G113959

Expression Profile