RNA id: XM_026940472.2


Basic Information

Item Value
RNA id XM_026940472.2
length 4969
RNA type mRNA
GC content 0.37
exon number 5
gene id LOC113542750
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 11481891 ~ 11543724 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAACAATGATGGAAGGATGTTCTTTCAGGATGTTCTTTTTCATCTGCTGTGATTTCGTGCAAGGTGACCTTAATCATTATCAGGATGATTAGCTTTCCAGTTACACATTCAAAGCTAAAAACTTTTGTCATGGATGCATGTGCAACATGAACTGCAGAgatgtcaaactcaaattctgcctgCCTTTGAAGAGCCGAAAGTTGTTTCATGGTGCCCAGTTGTGCCCTCCTAGATTgagtgtttaaacagttaatagctctgaatatctactcGTGGTTTGATCCCTGGGTTTCGCCTACGaagactgtttaaaaaaagaaaaaaaaaggataaaccaacacgAATACTATAGAGCTGTCTGTCGGAgcaaagcaagccattttgaagctgagaaaagaaggaaaattgatcagagccattgcacaagaaTTGgccatagccaatacaacaatttggaatgtcctgaaaaagaaagaaaccactggtgtattaACAACCAGCCATTAAACAGCACAGTCAAGGAAAACCACAGCATTTGATGACAGAAACTTTGTgagaactgtgaagaaaaacccaaaaacaacagtcagtgaccaacaacttccacagggcaggggtgaaggtatcattatccaccatttgaagatgTCTTCGACAGCAGAAATATATAAGCCTTACCACAAGTTgcaaccactcatcagcaggaagaatcggaaggccagattggaatttgcaaactAATatagagatgagccacaaaagttctggaaccaaggtTAACTGCTATCAAACTGATGGAAATGCCAAAGAATGGAGAAATAAAGGAGCTGCTcgtgatccaaaacatacaagctcatcagtcaagcatgaaTGAGGTTCCAGAGTGGCAAAGGACTGGTGATCTATCCTGATATCGGAGACAAGATGGATATTATCTGTCCGAAGGCAGATTCAGGCCAGCTGTATGAGTATTACAAGCTCTATCTTGTAAAGAAAGAACAAGCAGAGTCCTGCAGCACTGTACTAGACCCATATGTGTTGGTTACCTGTAATAAACCTCAGAAGGACATCAAATTCACCATCAAGTTCCAGGAATTCAGCCCCAACTACATGGGTCTGGAGTTCAGTAAGAACAAAGATTACTACATCACATCCACGTCCACTGGGTCTCTGGAAGGTCTGGAGAACCGAGAAGGAGGTGTTTGCAAAACAAGGTCCATGAAAGTCATCATGAAGGTCAGCCAAAACCCCAACATGCCAGTGCCAGACACAGATCAGGCAGAATCCTCTGTACCTGAACCTGATGCTAGTTTAAACCCTGCAAAATCAGACCAGGAAGGACCCCTGGAAGCTGGAAACACTGATACCATCAACCAGGAGAACAAGAATGACAGCATAGAAGGCATATTGGGCTCCAAGATTGCTGTGTTCTTATCTATTGGCGCTGGTTGTgtcatcttcctcatcctcattgTGCTCCTCATTGTTCTGCTCATCAAAGTGCGCAAGCGTTCACAAAAACCCACACAGCCACGGCCAACCGCTCTCTCACTCAGCACACTGGCCACCCCCAAGATTGTGGGGAGCAGTGGCTCTGAGCCCAGTGACGTCATCATTCCGTTACGGACCGAGAACAACTACTGCCCGCATTATGAAAAAGTTAGCGAGGGTTATGGGCATCCTGTCTATATAGTGCAGGAGATGCCACCCCAGAGCCCAGCTAACATTTACTACAAGGTGTGATCCTGGAAAAACTAAGATCACATGTTTTTTCTGTTAGACTTCCATTAAAGGAGCTTTTTGCGAGCTGCAGAGTTTTTCTTACCTTAACCTCGGACATGGGAAGATTTTGTAAAATAAGGAGGTGAAGGGAAGTGACCATAAGAGAAACAGTTGAATGTACAGCCTGTATGAAAAGAAGATGATAAAATAGTTTGTTATTGTAGGCTAAAGTTGAACTTTCTACCTGTTTCTTCTTCCTTAGTTTTCATACAAGGTGAACTGGGTAAAGTGCTATTTAGAGTGATCTCAAGTTACATGATATGCTTATTGGcttagaacaaaacaaaaaaattggtttCCTGTGCAATACTCAAGAAACAAAGCATCTAGAAACCATACACTGAACCCGAGAACATGTTTTAGATGTTTGTTATTAAATCCTGCTATTTCTGGTCGACCATCTGGTCGTACTTGGAGCCTTTTAAATGCTCAGGTAACGTGGCAGAAGGAGGACATATAAAGGAGAACATATGTTTGCCTTACTATTTTTGATGAAATTCATTGTAAGTGTTGATTTTCAGCTTTGTTTTAGGCATGTTTTTCCCACAATGTAATGTAACAATTCACTTTACAATCCCTGTTGCAAACATGCATACTAAACAATCATTCAACTGTTCTTTTGCATATAGGTAGTAATGATGTTCTTCATCATGAGTTTATGTACACATTTCCAAGTACAACCAGCCTCTGTCCCTTGTATTTTTGACCCCTGTATTTCTTGTGCTCATGTCAAGGCAACCAACAGAAAATCGTGGATTCTGAGCAGCTCAGTGGAACAGGATTAATGATGGGAAACGTACATGCAAgtattaatgatttaaatattaCCAATTTTAATTAGCGTTTCAGCAACACACAAGCATGATTCATGACTTAggaactaaaataaaatgtcaactAACAAATATTTCTGGGATCAAGCAGAATGCTTGTTTGGAAGCTAAGCCTCTGCTCACACATCGAATAGTTAGTTAAAGTAGGAAAAAATGGATATTAGTTCAGGCAGTTCAATAGCACAGGAGCTGGAAGGAAACTTGTGTGTCAAAAGCAAAACTGAAcagacaaaaaattaaatatcataGCCTGAAGAAGTGTGGCTTAGATGTGAATACTGGAACAAGAGAtgacagaaacacagattatcagaaattgtttttttccaaaatataaatacaaataagttCCTTTTGGTCATTATGACAGAGGGTGAGCATGTGGTCTTGTGACAATTTAATCATCTCAATACAAGACAATATTGGaggttattttgtttttcttttaagtaaatcatgatcattttcaattttgaaggttactgtctgtttgaTAGTAATTTATCAAGAataaatttaaatcaaatttgtCTGGCACAGAATTTGTAAGAGAATattcaaacatttctttttattaaaacagtttctttttattaaaaaaagtaggCAGCATAGCAAAGGACGGTCATCcatgttaaaagaaaattaatttaaaaaattaataaattaatcaattagttgatttgattaattaataacaatgtaaagttaatgaataaatgaatggatgaattaataaattattaaattattaatactgACAAACGATTAACAGTAAAACTTTGACTTCCTTTTGCCCTGTGTTTATCTCCATAGACAATGATTGTAGACATtctccttatatatatataaaatatatataaaaaaaaaagtaagaaatacAGCATCAGCATCTCTAGGAGAGTGGAAGTAATTTCCATTGTCTTCTGGGAgtatttcctttctcttttactgttttatttttagctattGTCTATGTTATTTACAATCTggcaaaaaaattacatatttactCAATGTACTCAATTTGAGTCAATGTAAATATGTggataaacaataaaaagaaaatctaatttACCTGAGTGCTGTGTAAGcaaagaatacagaatttttgTAATGATGTTTTTTGTAAATAGTTGTCTctttaaattgcattttgtataaattctctcttttcacttttctgaGTGGGACAAAGCTAAAATTTCAGTACTCTATGAGAGACTGATGCACAGCATCCAGACATACCCAAAGTGCCAgacatgtttttccatttaagATAGACATTGTTGAACCCAGATACCAAATTATAAATCTAAACCATTCTACTTATGGACATGGAAGATAACCAGAAAAATCATCTCAATATGGTCGCAGCTATGAGCTTGACCATAACCACCATTTATCTCTAACAAGCACTAAGATTAGCACCTAAATTATAGCACTTCATTCTATTTTGGGACACCCATTATTTTATATCACAGGACAGTGCCTTTAACTGTGTGCACGTTAAATTAATCACATGTTTGTTTTCAGGTTGAATATTTACATAGTGAGGTTTGCCTTGCCATGTCTCTGTCATTCTGATAAATCAGAAGGTATGTGAACTTTATGAACTTTACCTCATTTCCCAGCTCTGTCTTTCGGTGGCTTCTGGGAGCAAGAAAGTACATGACATAATGACACCTATATTGCTGAGACAACCTTGACTTCACTTTTGTAGGTCCCTGCTATGAGTGCACACTGTCCAAAAGGTCTCATTATTTGCTTGATGGTGGTCAAGCTAGATGCAAAGACCTGTTAATTATTCAGTCACTTTTGCATAGTCTCCCAACAACAAAATGGAGCTGAAAAATAAGACACTCTAGGGTTTTACATACATCACTTATCATTATTACATAAGGTACCAGGTTCCTCAGGTTTTGCCTAGTATTTCTTTCCCATTTTTAACCAGGAATTCACAGTTCAGAGTTATATGTTGGTGTTTTGCTCAGTATTGTACCATGTGTTAGCCCTCACTTCCCTTCCATGGATGTAGTTGATGTGTGggttgtttagatttttttcaggtttgtgTAGCTTCATGTCAGTGACCCTGGTGAATCTTTTTACTAGATACATTTTGCCTTTACAAAATGGATTGGTTCTCATTACTTGTGGAACTGACAGCTGTGTCATAGTATTATGTTGGGTGTACATGCTTACAAAGCCTGGTTTCCTCTCTTTATATCTCCATGTTGTTTTTGTCACGTacaccacttttttttctttttcctatggTGTAATACAAAACAGTATTTTAAACCTGATAGTGCTTGTGTGacagaataaaaaatgtcaaGGTGAATtttc

Function

GO: NA

KEGG:

id description
K05463 EFNB; ephrin-B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133999 lncRNA downstream 6821 11474175 ~ 11475070 (-) True G113456
TU133998 lncRNA downstream 8242 11473359 ~ 11473649 (-) True G113455
TU133956 lncRNA downstream 28066 11453571 ~ 11453825 (-) True G113417
TU133954 lncRNA downstream 31237 11450303 ~ 11450654 (-) True G113415
TU133903 lncRNA downstream 259219 11222450 ~ 11222672 (-) True G113369
TU134063 lncRNA upstream 79462 11610436 ~ 11610971 (-) True G113517
TU134105 lncRNA upstream 180795 11711769 ~ 11712005 (-) True G113559
TU134131 lncRNA upstream 196087 11727061 ~ 11727392 (-) True G113585
TU134140 lncRNA upstream 210472 11741446 ~ 11741647 (-) True G113594
TU134142 lncRNA upstream 211687 11742661 ~ 11742874 (-) True G113596
XM_026940584.2 mRNA downstream 82995 11388502 ~ 11398896 (-) True LOC113542810
XM_026940396.2 mRNA downstream 110698 11368194 ~ 11371193 (-) True asb12b
XM_034305859.1 mRNA downstream 156423 11260091 ~ 11325468 (-) False LOC113542749
XM_026940548.2 mRNA upstream 494807 12025781 ~ 12063137 (-) True hdac3
XM_034306017.1 mRNA upstream 494807 12025781 ~ 12063090 (-) False hdac3
XM_034305660.1 mRNA upstream 548550 12079524 ~ 12112216 (-) False LOC117597634
XM_034305661.1 mRNA upstream 577869 12108843 ~ 12112208 (-) False LOC117597634
XM_026940665.2 mRNA upstream 638734 12169708 ~ 12174905 (-) False LOC113542864
TU133937 other downstream 122312 11359138 ~ 11359579 (-) True G113398
XR_003404347.2 other downstream 156423 11260109 ~ 11325468 (-) False LOC113542749
XR_003404336.2 other downstream 1888566 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 2999828 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 5653333 5826230 ~ 5828558 (-) True G110290
TU134062 other upstream 80999 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 287904 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 577870 12108844 ~ 12112201 (-) True LOC117597634
TU134531 other upstream 790357 12321331 ~ 12350528 (-) False G113959
TU134534 other upstream 801782 12332756 ~ 12362272 (-) False G113959

Expression Profile