RNA id: XM_026940490.2


Basic Information

Item Value
RNA id XM_026940490.2
length 2438
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113542757
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10326781 ~ 10334540 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGTGCGTCACTACAGCACTGCGGAACTGTCGCTACGcggttgtgttttggttttggtgaaACCAAATCTTACATAGAATTTtatctggctttttttttcttgcattgcTTGAAGAATATGGTGAAGATAGCGTTTAATTCCGCTCTGGCGCAGAAAGCGCTTGTAAAAGAGGTGCCGGTCTCAGAAAAGGACCCTGAGACCGGCTCCGTGTACAGCAGCGAGAGTTCCACCGGCCGCTGTCTGCTCACGCTGCTTGGCCTGGCCTTCATCATTTCAGGCCTCATTGTTGGCGGAGCCTGCGTGTACAGGTATTTTACACCCAAGAAGCTCTATCATGGATCCATGCAGTTCACAGATATGGACAGTGCTGATATACCTATGGACATGGAGGCCCATGAGCCTTACTACCTACCCCGTGTTGAGGAGGATGTGGAGATCCGTGACAACGTGGCCATCATTAACGTCCCTGCACCTCGCTTTGGGGCAGGAGACCCAGCTTACATCCTGCATGATTTTAAGAGGAAGCTGACTGCTTATTTGGACCTAACACTGAGGACGTGCTTTGTGATCCCTCTCAACACTTCTGTGGTGATGCTGCCCCAGGACCTCTTGGATTTGTTCTTGCAGCTCAtgTCTGGCTCATACAAGACTCACTTGGTGCATGAGGATCTGGTGGTGACTGAGCGCATCGATGACCTTGCCCCCTTGGGCTATTATATTTACAGCCTGTGTGAGGACAGACCAACGTACAGGATGCAGCGCCGCAGTGAGATAATGGGCCTCCAGAAGCGCTCGGTGGAGGATTGCCGCATAATCCGCCACTTCGAGAATAAGTTTGTTACCGAAACAAAGATCTGCCAAGCCTGAGCAAGGAAGAAGTCAGGAGGGGACAGACATCCCCCCTTTCGTTGCAGGGTAGGGAGTGGTGAAGCGAGCTGaaagagggagtgagggagggcTGAGAGGAAAGGGTCTGTCTTCCAACTCCTGCTGTAGTGTTTAGCATAAGGTGTTTTGTATTAATTTAGAGACAGCagacttttctcttctctcacttAAGGTGTAGTGATGTAGCTCTCCTAAAGCAGTTTGTGATTTCTTACACCTTTGTCATTGTACACCGTGATTCCCTCTACAGCCTGACTGCAGCTCAAACCTTGTTTTTAGTGTGTGCCTTGTCACCATTTGTTGTGGATAATTATTTGTGAACTGTGCAAAATGTTAACCTTAGTGAACATaagttaatgttttgttttgttttgtttttttccccttcggCAGAAGTATTACTACCTAAGCACACGCTGATACGCCTCTAGTCTAGCCTGTATGATATTTCCCAACATCTTTTCCTCCAGCTAATTACGTATCAGTGTATAAAGACCCACATGGTCTCTAGAGATCTGATCAGCTTAAAACTCTTAAAATTCTACTtttttgtgttcatgtgtttgaGGAACTAACCATGTATCACATGACGTGTAATTTCTACATGTCTACTGATCAAGCAGGCTCTGTGAAGCGTTGCTTCTGCCAGTGTCCCGGCTAATGTATATGTGTACAATTTAAGGTGTCCATTACACATAGCGTGCTTGTAACATGGTAAATTATGTATCTCAATCCAAATTATAAATGCCTCATAATGAAGGATAGTCAGTACGAATGCACCATGATGCTAAGATTTTAGAACATTTAGAGATTAGGActtattaaacagattaaatagcTTCCTGTGCAAGATTTCACATTCAGAGTGGTTTAGCCTGGCCATCTCTGTCCTCTGGCCTAAACATTTGTTGTGGGCCACATTGCAAAGTTTCACTGCTGAGACACAGTGGTGTGTTAACAATCACTCGACTGATCAGCAATTTGAACCTTCTGCTCAGGCCTTTTTAATCTCTTTTGGAGGACTTGATGTTCATCCTTCAGCAAAAGGATGTAGCATTGAGATGATGTTAAAAATAGCTACCAGCagggttggtttttttttttttttttttttttttcaaaagccaTGAGTGCTGTTTAATTAGGAAGAAGAAGCTGTCTGTCTGAGCAAAACCAGACCGACCGCTTACGTACTGGGACGTCACCCTAATATACCCGAAGCCACCACATCTCTCAGTTTTCACAATGGTTTTCCGTTGCACCATCTTGTCAACTCTGGCCTAACCCTGCATGGCACCATGGTTGTTCAATTGTTTTGAAATTCCCTGCATTCTAAAAAGTTACATGTATATTTTGGAAGGATCAGTAGTTTAACTGCTGCTCAGAAAATGACAATCAAGACTGGAGTCTCTAttgctgtctttctgtttgtACTGATTCAGAAAAACAGACCTGAAAGATGCTGGACTGAATCAAAGAAATGTACTACTGAAATGTTAAACTGCTTTCTGaagtttgaaaataaaatgcatttctttacttaaaaaa

Function

GO: NA

KEGG:

id description
K18241 ITM2A; integral membrane protein 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578481.1 lncRNA downstream 85272 10234819 ~ 10241509 (-) True LOC117597733
TU132995 lncRNA downstream 102130 10223944 ~ 10224651 (-) True G112569
TU132886 lncRNA downstream 323789 10002779 ~ 10002992 (-) True G112473
TU132869 lncRNA downstream 356132 9970377 ~ 9970649 (-) True G112459
TU132863 lncRNA downstream 359338 9965785 ~ 9967443 (-) False LOC113542827
TU133096 lncRNA upstream 19165 10353705 ~ 10353904 (-) True G112651
TU133142 lncRNA upstream 111109 10445649 ~ 10445952 (-) True G112689
TU133143 lncRNA upstream 113859 10448399 ~ 10448613 (-) True G112690
TU133144 lncRNA upstream 114115 10448655 ~ 10448962 (-) True G112691
TU133207 lncRNA upstream 160758 10495298 ~ 10506943 (-) True G112745
XM_034305889.1 mRNA downstream 93310 10225121 ~ 10233471 (-) False cysltr1
XM_026940480.2 mRNA downstream 96998 10225121 ~ 10229783 (-) True cysltr1
XM_026940479.2 mRNA downstream 103241 10175648 ~ 10223540 (-) False LOC113542752
XM_026940478.2 mRNA downstream 103241 10175648 ~ 10223540 (-) True LOC113542752
XM_026940637.2 mRNA downstream 154811 10158692 ~ 10171970 (-) True rraga
XM_034306187.1 mRNA upstream 49771 10384311 ~ 10397034 (-) False LOC113542679
XM_026940344.2 mRNA upstream 49771 10384311 ~ 10397034 (-) True LOC113542679
XM_026940345.2 mRNA upstream 49771 10384311 ~ 10395548 (-) False LOC113542679
XM_026940799.2 mRNA upstream 124283 10458823 ~ 10462934 (-) False hmgn6
XM_026940800.2 mRNA upstream 124283 10458823 ~ 10462934 (-) True hmgn6
XR_003404336.2 other downstream 733456 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 1844718 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 4498223 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 4528845 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 4637942 5687579 ~ 5688839 (-) False zgc:113229
XR_003404347.2 other upstream 925569 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 1024598 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 1277433 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 1484338 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 1774304 12108844 ~ 12112201 (-) True LOC117597634

Expression Profile