RNA id: XM_026940499.2


Basic Information

Item Value
RNA id XM_026940499.2
length 3348
RNA type mRNA
GC content 0.48
exon number 22
gene id rps6kal
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10626540 ~ 10662608 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTGTGTTGCTATGGGGCGCGCGGAGGCGGCCATGTTGCCCATGTTCGTGTCAATGGGAAAGTAAAGAGGCGGCCGGGTTCGTTTATGGTCCGATACTCGAGCCGAGCCTCCTGAAGCGAGTCTCTGGCCGAGCTGCATCCCAGAGTCAGACTTCCTGACATTGCTATCTGAATTCATATTAACATCTGAGTTGCGTGTCATTGTGAACCTGAGCTAGCCGAGCTTCCGCAGCGAAGGCATGGCTCGCCATACGCGGCTCTAGTTCTACCTTATGATGCCTTTTGCCCGGCCATTGCATTCCTGGCACAAAATGGAGGTGCACAGCTTTAGCGGCGAGATCAACGGGCATCAGGTCGCAGATGAGCCGATGGAAGAGGGAGAATCCTGCACACACTGTGATGACGGGTCCTATAAGGAGATCCCCATCACTCATCACGTAAAGGAGGGCTGTGAAAAGGCTGACCCTTCCCAATTTGAGCTGCTTAAAGTACTGGGCCAGGGATCGTTCGGAAAGGTGTTCTTGGTGAGGAAGATAATGGGCCCAGATGCTGGTCAGCTGTATGCAATGAAAGTCCTCAAAAAGGCATCATTAAAAGTGAGGGACAGGGTTCGCACAAAGATGGAACGAGATATTCTGGTGGAAGTGAATCATCCCTTCATTGTGAAGTTGCACTATGCCTTTCAGACAGAAGGGAAGCTCTATTTAATTTTGGATTTTCTCAGGGGTGGAGATGTATTTACTCGCTTATCCAAAGAGGTTATGTTTACAGAGGAGGATGTGAAATTCTACCTTGCAGAGCTGGCCCTTGCATTGGATCACCTTCACAACCTAGGCATTGTTTACAGAGACCTGAAGCCTGAAAACATTTTGCTTGATGAAGCTGGACATATCAAGCTAACAGACTTCGGGCTCAGTAAAGAATCAGTAGACCAGGATAGGAAAGCGTACTCTTTTTGTGGCACTGTGGAATATATGGCCCCTGAGGTGGTCAACAggagaggacacacacagagtgctgaCTGGTGGTCTCTTGGTGTTCTAATGTTTGAAATGCTGACAGGGACATTACCATTTCAAGGGAAAGACCGGAATGAGACAATGAACATGATTCTTAAAGCTAAATTGGGAATGCCACAGTTTTTAAGTTTGGAAGCACAGAGTCTTTTAAGAATGCTCTTTAAAAGAAACCCAGCAAATCGTTTAGGAGCCGGTCCAGATGGCGTAGAAGAGATCAAACGACACGCCTTTTTCTCCACCATAGACTGGAACAAGCTGTACCGGTGCGAACTTCAGCCTCCTTTCAAACCAGCAGCGGGAAAACCAGACGACACATTCTGCTTTGACCCTGAGTTCACAGCAAAAACCCCAAAGGACTCTCCAGGCATTCCTCCCAGTGCAAATGCACACCAGCTCTTCAAAGGCTTCAGCTTTGTAGCGCCAGTCTCCCTGGAGGAGAGCAAGAGCTCCCCTCTAGTTAGCATCCTCCCCATTGTTCAGATGCATAGCGGCACAGCACAGTTCTCGGACGTGTACGAGCTGAAAGAGGACATCGGCGTGGGCTCGTACTCCATATGCAAGCGCTGCATCCACAGAGTCACAACTATGGAGTTCGCAGTGAAGATTATTGACAAAAGTAAACGAGACCCTTCAGAGGAGATTGAAATTCTTATGCGGTACGGCCAGCACCCGAATATCATTACATTGAAGGATGTGTATGATGAGGGGCGATTTGTGTATCTGGTAACGGAGCTAATGAAGGGAGGAGAGCTGTTGGATAAGATTCTCAGGCAGAAGTTCTTCTCAGAACGAGAAGCAAGCGCTGTGCTCTACACCATCACCAAAACGGTGGACTATTTGCACTGCCAAGGGgtGGTTCATAGGGACCTGAAGCCCAGCAACATTCTGTACATGGACGATTCGGGGAACCCCGACTCCATCCGAATCTGCGACTTTGGCTTTGCCAAGCAGTTGAGGGGGGATAATGGCCTTCTGCTCACACCGTGTTACACTGCTAACTTTGTAGCGCCCGAGGTATTGATGCGTCAGGGTTATGATGCAGCCTGTGACATCTGGAGTCTGGGCGTTCTTCTTTATACCATGTTAGCTGGGTACACCCCTTTCGCTAACGGCCCCAATGACACCCCAGAGGAGATTCTATTGCGTATCGGCAGTGGCAAGTTCTCTCTCAGTGGAGGAAACTGGGACACCGTATCTGACTCCTCAAAGGATCTTTTGTCTCACATGCTTCATGTGGACCCTCATCAGCGGTATTCGGCCGAGCAGGTACTGAAACACTCATGGATTGCCTGCCGGGACCAGCTGCCCCATTTCCAGCTCACCCGACACGATGCACCTCACCTGGTTAAGGGAGCAATGGCTGCCACATACTCAGCATTGAATCATAAGACATGCCAGCCAGTCCTGGAACCTGTGGCAGCTTCCAGTTTGGCCCAGCGCAGAAGCATGAAGAAGTTAACTTCCACTGACATGTTGTGAACAGAAGCATCTTCACATCACTGTGTTCTCTCCTCCccattttgtctatttatttgtttgctccTGTCCCCACTGTTTGGCATTTTTCCTCAGCACCTACACATTGTAATTGGACATGAGACATTGTCTATTTGGACACTTTGACATTAGGGAGGCTGTTTAGCAAGTTACAGACTGAGAGACTGCACTGAACATGGCTGAAATCTAAATCCAAAATGCTGCAgggctgcagtgtgtgtttttttttttttccccatttcctcTTATATGCATTCTCTGGAACTCtccatttttgtcttttctcgatcattcttcattttctctctccctctttcccgcTAAGTGGAAAAACAGCACCAGCGCCTATTCTCATTCACTGTGACTGGCTGACCTAAAGCTGCTTTAAGTAAACTGTGCTCTGCCTTCCTTCCCCAGTTTAAAACACCTCTGTTCATTCGCCACTCCTCTTCTCCCTCTGTCTTGATCAGCCTACTCCTGTCTCTTGATAGTTTATCTGAGAGGAAAGGTGCGTTTTGGAAGTTTCCTGTCTTTTAAAGCCATTTAGCATGCGGCTGGAGGAATCAGTGTATCTGAACCACTCAATGTTACCTCAAGTCGAGTTGATGAGCTGAAAGCGGAGACTTCTTTAAGCTTTCAATGAGTGTATATAGAATTTAGCGCCAGAGAGATTGTCAAACCCGACCCGATCAACCCCCATCATATCAATTATATTTAAGCAGATTTGCACTGAAGCTTGTCAGGTTGttgcttttgcattttttttttttattttttgcccaTACCCCAACTTgatccttttttaattttctatttgtgttaaaaaaataa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133207 lncRNA downstream 119597 10495298 ~ 10506943 (-) True G112745
TU133144 lncRNA downstream 177578 10448655 ~ 10448962 (-) True G112691
TU133143 lncRNA downstream 177927 10448399 ~ 10448613 (-) True G112690
TU133142 lncRNA downstream 180588 10445649 ~ 10445952 (-) True G112689
TU133096 lncRNA downstream 272636 10353705 ~ 10353904 (-) True G112651
XR_003404353.2 lncRNA upstream 153140 10815748 ~ 10843208 (-) False LOC113542794
XR_004578450.1 lncRNA upstream 173973 10836581 ~ 10843208 (-) True LOC113542794
TU133421 lncRNA upstream 174812 10837420 ~ 10843262 (-) False LOC113542794
TU133447 lncRNA upstream 192291 10854899 ~ 10856847 (-) True G112962
TU133457 lncRNA upstream 194375 10856983 ~ 10857542 (-) True G112963
XM_026940799.2 mRNA downstream 163606 10458823 ~ 10462934 (-) False hmgn6
XM_026940800.2 mRNA downstream 163606 10458823 ~ 10462934 (-) True hmgn6
XM_034306187.1 mRNA downstream 229506 10384311 ~ 10397034 (-) False LOC113542679
XM_026940344.2 mRNA downstream 229506 10384311 ~ 10397034 (-) True LOC113542679
XM_026940345.2 mRNA downstream 230992 10384311 ~ 10395548 (-) False LOC113542679
XM_026940556.2 mRNA upstream 3708 10666316 ~ 10701963 (-) True hdx
XM_026940558.2 mRNA upstream 3708 10666316 ~ 10682932 (-) False hdx
XM_034306030.1 mRNA upstream 3708 10666316 ~ 10682931 (-) False hdx
XM_026940554.2 mRNA upstream 3708 10666316 ~ 10682930 (-) False hdx
XM_034306031.1 mRNA upstream 3708 10666316 ~ 10678084 (-) False hdx
XR_003404336.2 other downstream 1033215 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 2144477 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 4797982 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 4828604 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 4937701 5687579 ~ 5688839 (-) False zgc:113229
XR_003404347.2 other upstream 597501 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 696530 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 949365 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 1156270 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 1446236 12108844 ~ 12112201 (-) True LOC117597634

Expression Profile