Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034306017.1 |
| length | 1327 |
| RNA type | mRNA |
| GC content | 0.42 |
| exon number | 14 |
| gene id | hdac3 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047601.1 |
| NCBI id | CM018547.1 |
| chromosome length | 30450434 |
| location | 12025781 ~ 12063137 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0070932 | histone H3 deacetylation | biological_process |
| GO:0070933 | histone H4 deacetylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0032041 | NAD-dependent histone deacetylase activity (H3-K14 specific) | molecular_function |
| GO:0097372 | NAD-dependent histone deacetylase activity (H3-K18 specific) | molecular_function |
| GO:0046969 | NAD-dependent histone deacetylase activity (H3-K9 specific) | molecular_function |
| GO:0046970 | NAD-dependent histone deacetylase activity (H4-K16 specific) | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU134462 | lncRNA | downstream | 7507 | 12018054 ~ 12018274 (-) | True | G113893 |
| TU134308 | lncRNA | downstream | 18286 | 12007293 ~ 12007495 (-) | True | G113756 |
| TU134267 | lncRNA | downstream | 59047 | 11966027 ~ 11966734 (-) | True | G113715 |
| TU134264 | lncRNA | downstream | 63039 | 11960139 ~ 11962742 (-) | True | G113712 |
| TU134241 | lncRNA | downstream | 128418 | 11897125 ~ 11897363 (-) | True | G113691 |
| TU134520 | lncRNA | upstream | 106539 | 12169629 ~ 12174833 (-) | False | LOC113542864 |
| TU134521 | lncRNA | upstream | 106539 | 12169629 ~ 12174833 (-) | True | LOC113542864 |
| TU134525 | lncRNA | upstream | 118275 | 12181365 ~ 12183096 (-) | True | G113954 |
| TU134554 | lncRNA | upstream | 195125 | 12258215 ~ 12263170 (-) | True | G113972 |
| TU134561 | lncRNA | upstream | 215732 | 12278822 ~ 12283054 (-) | True | G113979 |
| XM_026940470.2 | mRNA | downstream | 482057 | 11481891 ~ 11543724 (-) | False | LOC113542750 |
| XM_026940471.2 | mRNA | downstream | 482675 | 11481891 ~ 11543106 (-) | False | LOC113542750 |
| XM_026940472.2 | mRNA | downstream | 494807 | 11481891 ~ 11530974 (-) | True | LOC113542750 |
| XM_026940584.2 | mRNA | downstream | 626885 | 11388502 ~ 11398896 (-) | True | LOC113542810 |
| XM_026940396.2 | mRNA | downstream | 654588 | 11368194 ~ 11371193 (-) | True | asb12b |
| XM_034305660.1 | mRNA | upstream | 16434 | 12079524 ~ 12112216 (-) | False | LOC117597634 |
| XM_034305661.1 | mRNA | upstream | 45753 | 12108843 ~ 12112208 (-) | False | LOC117597634 |
| XM_026940665.2 | mRNA | upstream | 106618 | 12169708 ~ 12174905 (-) | False | LOC113542864 |
| XM_026940666.2 | mRNA | upstream | 106618 | 12169708 ~ 12174897 (-) | False | LOC113542864 |
| XM_034306173.1 | mRNA | upstream | 235076 | 12298166 ~ 12310163 (-) | True | LOC117597734 |
| TU134224 | other | downstream | 167765 | 11818878 ~ 11858016 (-) | True | G113674 |
| TU134062 | other | downstream | 413212 | 11611973 ~ 11612569 (-) | True | G113516 |
| TU133937 | other | downstream | 666202 | 11359138 ~ 11359579 (-) | True | G113398 |
| XR_003404347.2 | other | downstream | 700313 | 11260109 ~ 11325468 (-) | False | LOC113542749 |
| XR_003404336.2 | other | downstream | 2432456 | 9587828 ~ 9593325 (-) | False | si:ch211-153b23.4 |
| XR_004578392.1 | other | upstream | 45754 | 12108844 ~ 12112201 (-) | True | LOC117597634 |
| TU134531 | other | upstream | 258241 | 12321331 ~ 12350528 (-) | False | G113959 |
| TU134534 | other | upstream | 269666 | 12332756 ~ 12362272 (-) | False | G113959 |
| TU134600 | other | upstream | 360638 | 12423728 ~ 12424057 (-) | True | G114013 |
| TU134687 | other | upstream | 437881 | 12500971 ~ 12504801 (-) | False | timm8a |
