RNA id: XM_034306031.1


Basic Information

Item Value
RNA id XM_034306031.1
length 2259
RNA type mRNA
GC content 0.49
exon number 10
gene id hdx
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10666316 ~ 10701963 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGAGCAACAGCGTATCCTTGAGCGTTACTATGAAAATGGGATGACTAATCAAAGCAAAAGCTGCTTCCAGCTAATTCTTCAGTGTGCTCAGGAGACCAAGCTTGACTTCAGTGTGGTCCGGctctctgtggacTCTGAAGAACATGCTTGACAAATTACAGACATGGGTAGGCAACAAGAGACGAAAACTGGCTTCCAAAGCCGATAAGAATGGAATGGTTGGTTTGTCTAACCATGCCATTGTCGGTGCTGGAGGAACTCTTGGCCCGGTATTAACGACAGATATGGCTGCTGTGCGTAGTGTTCAGCGTGGGCCGTCTACAGTTCACCTCCTTTCTCCCCAAGCCTCCTgcccttcatcttcatcttcctcctcctcctcctcctcctctccgtCCTCTAATGGATCCAAAAACAGCAATGATGTAATAGTGACTGGTGCCTACTCTCTCCCACGCATTGTCAACCGCGTAGAGTCTTCATCCCAGAGCAGGGCAGCCGCAAAAGTAGTACCATTAAATCCTAATACTGAATCAAGTCTGCAATCTCGGCTTGTCTTGCACCCAGATGTGGTGTCCCTCCAACGCAAATCTCCTCATATCCCCAACTCCAGCACCTTCATGTTTAGTCAGATGAAAAGGTTGCCTCGAGAGCTGTCATCAGTTGCCCCCAGCTGGGTGAAGCAATGTGGTGCTCCACAGCACCAGCAATGGCCCCCAACTTCACACCATCAAACAGTGACGAACCTACACCGAACTCCCCCAGCAAGTACTGCAGAAAGCGGGGTCAGGATCCAGCAGGTGTTCACCATTGCTGGGTTAGCGGAGACCTCACAACGTCCTTCCAGTGAAACGAGTCAAGATCACAGGATAAGAAAAACGTGTGTGCCTGATTCATCAGAAACTTTTTCAATTGCAATGGAAACAGGGGATGCAGACGACGAGTATGCGAGGGAAGAAGAGCTGGCCAACATGGGCTCCCAGATGCAGCTCAGCAAATCTGCAAGTAGCAATGTTACTGGAGTGCAAAACAGTAGGATCTCAACAGAAGAGTCTTCAACAATTAATAGCCAGGGTATGTACACTGTGACGGCAAGGAACCTGCTGGAGGTGGCACACAGTTCCCCcaattctgtgtgttttggagaAAAAGGGTGCCAAACCAGCAGTGCTTTGCTGCTTGATTCGGGCTCCAGTGGCAGCTATCCAATAAGACACTTTGCAGAGTCCTCTTCATCAAGAATACCCAATCTCAAGGTAAGTATCATGTCATCTCCCTGGCTTCTTAGCAACTCCCGTAAAAGAACGCTCCAGGATAGGACCCAGTTTACTGACGAAGATCTGTACACACTAAAGAGGTACTGGGACAACGGCATGACCAGTCTGGGCTCTGTGTGCAGAGAGAAGATTGCAGCAGCTGCCACTGAGCTCAGTGTGGACAGTGAAATTATTAAGACGTGGATCGGTAATCGCAGGAGGAAGTATCGACTGATGGGCATTGATATTCCACCTCCCAAAGGTGGGCCAGCGACCTTTCCTAAAGTAGCCAGTGGAGAGCTCCCATCACCTTTGACCCCTGAGGGAGACAAGCCTAAGTTTATTGAGCCACCACAGGACAGCGAGCAGAATGATGCCGTGTCGCTTTGTTTATCTGAAGATGGAACGAGTGACTCTTATCTGAGGGAGAATGATGATGGGAATGATGGGCTGAATAGTTCTGCTCTTGCTGGAAATGTGAAGATTGAAATAattgatgaaggtgatgatgatgaagatgacagtgatgtgatgGCCACTGATATGGAACACATGCATAATCTTTTAGAGTACAAACATGAGGAAGTCCAATACCTTGAGAGTGAGCTcgagagacaaaaacagaagtACCATGAGCTGAGGACCTTCACTAAAAGCCTACTGTCTGCGCTGAAGAGCAGTGACACAGAAAAGCAGCAAGAGCTTTTAGCCAGCCTACCTCACCAAGTGGAAGAAGACTTTGCGTCGAGTCCAGAAAGGAATGCTGAGTCTAGCATCGAGATGAGCTCCAATCAGAAGGATTCCTCTGTATCAGAGGGGGAGGGGGACGCCGAGCCTATGGGACAGTAGTCCATCCtctcctctacacacacatacacggaCACTCACTACACCGTACCTGTGGTAGACTCCCAAGAACTGTAACAGACCCactgcagcctttttttgctgcataTCAGATGGATAAATCCGATCCTAAGTCAATAAACTTCTCTAACTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133207 lncRNA downstream 159373 10495298 ~ 10506943 (-) True G112745
TU133144 lncRNA downstream 217354 10448655 ~ 10448962 (-) True G112691
TU133143 lncRNA downstream 217703 10448399 ~ 10448613 (-) True G112690
TU133142 lncRNA downstream 220364 10445649 ~ 10445952 (-) True G112689
TU133096 lncRNA downstream 312412 10353705 ~ 10353904 (-) True G112651
XR_003404353.2 lncRNA upstream 137664 10815748 ~ 10843208 (-) False LOC113542794
XR_004578450.1 lncRNA upstream 158497 10836581 ~ 10843208 (-) True LOC113542794
TU133421 lncRNA upstream 159336 10837420 ~ 10843262 (-) False LOC113542794
TU133447 lncRNA upstream 176815 10854899 ~ 10856847 (-) True G112962
TU133457 lncRNA upstream 178899 10856983 ~ 10857542 (-) True G112963
XM_026940499.2 mRNA downstream 3708 10626540 ~ 10662608 (-) False rps6kal
XM_034305929.1 mRNA downstream 3708 10626540 ~ 10662608 (-) True rps6kal
XM_026940500.2 mRNA downstream 16482 10626540 ~ 10649834 (-) False rps6kal
XM_026940799.2 mRNA downstream 203382 10458823 ~ 10462934 (-) False hmgn6
XM_026940800.2 mRNA downstream 203382 10458823 ~ 10462934 (-) True hmgn6
XM_026940521.2 mRNA upstream 221937 10900021 ~ 11041414 (-) False LOC113542771
XM_026940520.2 mRNA upstream 221937 10900021 ~ 11041414 (-) True LOC113542771
XM_026940426.1 mRNA upstream 413613 11091697 ~ 11099390 (-) True LOC113542731
XM_026940469.2 mRNA upstream 580367 11258451 ~ 11325468 (-) False LOC113542749
XM_026940466.2 mRNA upstream 580367 11258451 ~ 11325468 (-) False LOC113542749
XR_003404336.2 other downstream 1072991 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 2184253 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 4837758 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 4868380 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 4977477 5687579 ~ 5688839 (-) False zgc:113229
XR_003404347.2 other upstream 582025 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 681054 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 933889 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 1140794 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 1430760 12108844 ~ 12112201 (-) True LOC117597634

Expression Profile