RNA id: XM_026940644.2


Basic Information

Item Value
RNA id XM_026940644.2
length 2262
RNA type mRNA
GC content 0.40
exon number 8
gene id sybl1
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 10093796 ~ 10105232 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGAAAACGTCATTTCCGGGATGCAGTGGGGCGGAAGTTACTGAAACCTGCGGAAGGAACTTTCAGCAGCTGTTAAgctttttaatgtttacaaCGCAAATAAAGCCTAGAAGGTTTGATTAAAACTGTACCAGCTCTGTGCTATGGCGATCCTTTTCGCTGTGGTAGCTCGTGGAACCACCATACTTGCCAAACATGCCTGGTGTGGAGGAAACTTTCTTGAGGTGACGGAGCAAGTTTTGGCGAGGATTCCATctgaaaacaacaaattaaCCTACTCACATGGCAGCTATCTCTTCCACTACATCTGTCATGACCGAATTATCTATTTATGCATCACAGATGACGACTTTGAGAGGTCACGTGCATTCAGTTTCCTTAATGAAGTCAAGAAACGTTTCCAGACCACCTACGGCTCTCGAGCTCAGACGGCTTTACCCTATGCCATGAACAGCGAGTTCTCCAGCACTCTTGCTGCACAAATGAAACACCACTCAGATCCAAGAGGCTCAGATCGGTTGACAGAGACACAGATGCAGGTGGATGATTTGAAAGGCATTATGGTCCGGAATATTGATCTCGTGgcacagagaggagagaagctGGAACTTCTCATTGACAAGACTGAGAACTTGGTGGACTCGTCCGTCACCTTCAAAACAACGAGTCGCCACCTAGCTCGCGCCATGTGCATGAAGAACCTGAAACTgatgatcatcatcataatcatagCACTTGTGGTCCTGTTCATCATAGTAACAGCAGCATGTGGAGGTGTGACTTGGCCCAACTGCCGGAGCAACTAGGAAGCAAAGCTGAAGCTTCACCCTTCACTCTGACTGACCTGGAAGGGAaataactcactcactcaagaCCATTACGCCATCTCTACATTTGTCAGGTGTTCCTGATCTGTCTTCTGTATAGCCTGGCTTTCTCAGCTGCAGGCTTCTTAACAACGACTGCGtagctttacacacacaggaCTCCGAAGAGCCTGAAAATTAAACACACCCTTTCCAAATCCTCCATCTTACTCCAAGATTCCCTGAGTGTTCCGATCGATTCAGCGAATGTTCGTGAGTGTGATTCCTCACTGGAACAGTTACTTTTATCCCATGTTGTGAAGCCGTTATGTTGGTGAACATATATGTCACGTTCTAACATGACATCTTTGTTAGCAAGGCACATTTTTATGCACACTCATTTGTGCAAAATcaacacactgtgtgtgaggtgaacAGTTGATTTtcagcacaccacacacaagcTCATTAATCAAAACTTACTGTTAGTACTACTCAGCAGCCTAATGTGTAGAACATTGTTCAAAATTCATCttgcataataaaaataaatgatgtttgGTATATTATGTATGTGTAGATGACAATTAATACACTGTATTATGATCACTATGATAAATGGAGtgattgaaatattgaaattcCACTTGTATCTATGGTATTAGtgttaatatttgaaaaaaaagtgagaaaaccAAACAACAATAATCAGTATCAGTGTGCATCAGAGAGTGTGTGACGCGCACAGATACAGGTTTACAGTTCGTCCCTCTTACGAGATAAATAACCAATAATAGCCAATGCACGGTTCTAACATGGTTAGATGGTATAAGTGCCActtgttcatgtttttaaagAGCAAATTATAATCCGAAAACACAGACTTTTATTCACTTATACAGTTAATGTGTGCAGgtccttatatactgtacagcCCATGTGTATATAGACATCTATTCCATATAGACTTCATTCATCTATAGTAATGCTGGCTtaatgatttctctaaactgaGTTTATCAAAACTTTAGCCCAGAGTATATACTTTCCCTTTGCTCAAACATGATCTACAGATTGTGTAATAACctgctttatatttttatttctgataaaaATGATGTACATTATAACAGTAATTACACTGCACTTCAGTTCAGATGAGTGTTTCCCACAGTTCTATTATATACATGCCTCGACTCATATTGAGCTCAACTGCAGATGTACAGTTAGTATACGAGAGTAGTATTTCATAAGAGGGATGAAGAACTAGTATGCACTGGTGAGTGTGAGATTTTCAGTCTCCCTGGTTGATTGTTACATATGTGtcaactgattatttttcacccacaatgcactttttttgtttgctttttgccataatgtaattattaatttgCCAAGAatcatgtaattatttaattattcatcaaATTTAGAATAAAAGTCTATCTCAAA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08515 VAMP7; vesicle-associated membrane protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132886 lncRNA downstream 90804 10002779 ~ 10002992 (-) True G112473
TU132869 lncRNA downstream 123147 9970377 ~ 9970649 (-) True G112459
TU132863 lncRNA downstream 126353 9965785 ~ 9967443 (-) False LOC113542827
TU132864 lncRNA downstream 128458 9964707 ~ 9965338 (-) True G112454
TU132856 lncRNA downstream 129817 9959642 ~ 9963979 (-) False tmsb1
TU132995 lncRNA upstream 118712 10223944 ~ 10224651 (-) True G112569
XR_004578481.1 lncRNA upstream 129587 10234819 ~ 10241509 (-) True LOC117597733
TU133096 lncRNA upstream 248473 10353705 ~ 10353904 (-) True G112651
TU133142 lncRNA upstream 340417 10445649 ~ 10445952 (-) True G112689
TU133143 lncRNA upstream 343167 10448399 ~ 10448613 (-) True G112690
XM_026940606.2 mRNA downstream 18181 10072171 ~ 10075615 (-) True rhogd
XM_026940551.2 mRNA downstream 101064 9981134 ~ 9992732 (-) True prps1b
XM_034305669.1 mRNA downstream 120001 9966780 ~ 9973795 (-) False LOC113542827
XM_026940612.2 mRNA downstream 120003 9966780 ~ 9973793 (-) False LOC113542827
XM_034305668.1 mRNA downstream 121790 9966780 ~ 9972006 (-) True LOC113542827
XM_026940573.2 mRNA upstream 15044 10120276 ~ 10130316 (-) True LOC113542803
XM_026940637.2 mRNA upstream 53460 10158692 ~ 10171970 (-) True rraga
XM_026940479.2 mRNA upstream 70416 10175648 ~ 10223540 (-) False LOC113542752
XM_026940478.2 mRNA upstream 70416 10175648 ~ 10223540 (-) True LOC113542752
XM_034305889.1 mRNA upstream 119889 10225121 ~ 10233471 (-) False cysltr1
XR_003404336.2 other downstream 500471 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 1611733 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 4265238 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 4295860 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 4404957 5687579 ~ 5688839 (-) False zgc:113229
XR_003404347.2 other upstream 1154877 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 1253906 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 1506741 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 1713646 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 2003612 12108844 ~ 12112201 (-) True LOC117597634

Expression Profile