RNA id: XM_026940657.2


Basic Information

Item Value
RNA id XM_026940657.2
length 2572
RNA type mRNA
GC content 0.52
exon number 9
gene id zgc:66447
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 9918373 ~ 9946526 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTCACAGGCAGGTGGGCGGGATCTTTCATCTGATTGGTCCATCTAGAGTCGGGTTACTCAGTGCTTCATAACAAACTGGCTAGTCAGGGAAACAGCTAGCCAGCCAGCCAGCAAGGCTAGGTTGCAGTAAGATAATCGTACAGGCAGAACGAAAAGTAGTAACTCGGTAAATAAATTTAGATGTAAATGTTGCAGCTAGGCTGTCGGTGATTTAAGATCTGGACACATTTGGTGAGAGCGGGAGAATGGTGGTTCCCGACAGCGGAAGCGGGGCCCAGCAGGCGGACAGCGGCATGGTCCCGGGGTTCGAAGACGAGCAGGATGGAGTGGAGCTGGAGGAGGTCCGCAAGTTGCGTGAACTCGTGCGGCGCCTTGAGGTCCAGAACGAAAGCCTGCGGAGCAGGGGCACCACGCATCGTCTCGACACGAACACTAACGAGAGAACACTGTGTGAGGACACTGGCACCAGCTCAGGCAGAGACTTCCAGACTTTGTCTCCTCCTCAGGACAGCATTAGTCAGGACATGTCTCCTCTTCCTGAAGCCACAAGGCTGGAGGATGAAGAAGAGATGGAACAACACAGCCCAGTTTTTAATCTTCCTTGTGCCGCTGCACCAGGGCACActcaagaacacacacacactagttcTTCTCCTGATAGCTATGATTCAGAGACAATCGGCGGGAGCGATGCAGGCGTGGACCAGTCCGCTCTGGACGAGGTGGATGTGCTCGACTTGGACGACTGTGCTGATATCAATGACGAAGACTGCTgGTTGTACGTATCTCCGAAGAAGCAGGTACAGACGGAGCAGGGCCCGGAGTCTCCTCTGAAATGGTGCCGGAAGGTGCTTGATCACCCGAGTCCTGAGACCGAGGTGGCTTGCAGGACGCTTCTGAGCCGTCTGGATCAAAGCTCAAGATGGAGGAACATGTACAGCAGCCCATCGCAAACCTCCGCGGGCTCATCAGCCGAGGCTGGCTCCTCTCATTCTCCTGGGTACCACAAATCAACTAACAAAAACCTACTAACCTGTGGCAGCTCAGGTTACAAGAGCATGCACTCGGCGCTGAGCTCCCAGTCCTCCATCGACAGCGAGCTGAGCACGTCAGACGATTCCATCTCAATGGGCTACAAGCTGCAGGACCTGACAGACGTGCAGATCATGGCTCGGCTACAAGAAGAGAGTCTGAGGCAAGACTATGCTTCGAGCTCGGCCTCGGCATCCCGGCGGAGCTCTGCGGCTTCACTGCACTCATTGAAGCGAGGCACCTACAGTGATCAGGAGCTGGACTCCTACAGCTTAGAGGATGAAGAGGCAGACAGCATGCCTTACACACACGTCCACCGCCGTCACTCGCCTTCTCCTGGCACCTCACCTCGCTGTCCATCACCTGCAGGTGGCACACGTGTGCCCAGGCGCTCCCTTCAGGGCACGGCGCCAGAGCTCCTCAAGTTTACTCGGAGTGAGGAGGAGTTAAGACACAGCATGCCTAACTTGGCCCCACGCACCAGCCTGCGCTCGCTGGAGGCAGTGAGAAACAGCCGCAGCATGGAGGCTAATCTGCACAGTTCAGGCAGCCGCATGTCCCGCCTGCCCCAGTCCCCCACAGGTGTGTCCAACACCCGAGTAAGAGGGAGTGGCCAGTCACCGCTCTTGTTGCGGGCTCCTGTGAAAGCTCTCAGCCCTGTAGGCAGCATGGCTGCAGTGCGACAGTCTGCAAGAACTACTGCTGGAGCTCAGGGGCACACTCCAGGAGCGCGGAGGGTGCAGTCACCGGGGCCTGCCAATGGAGCAGCTTACTCTGCAGGCAGGACTGCTACCACAGGGCCAAAGCAAGCAGTGGGCAGAAGCATGACACCTACTGCTCCAGCTAACTCAAAAAGCAGGCTTGCCCAGACCCCTAGAAGCAGGTCTCTGGGAATGACAAAAACCTGTGGTCCGATATCAGACGATTCCTGGAAGGATGGCTGTTACTAAAGCTTTTGTCATTCTCCTTTACACACTCCTAGAAAACGTCCGTAAAACACCTCTGCCTTTAAAAACATCACAGGGACGCTGGACACACCAAGGCCAGAAGCAGAAaggcacaaaaacacaccaaccCTGGAAAGTTTTACTCCAGCATGAATCCTCTTACCCCCACTGCCACACTAGCCAGACAAACGCTAATGGAAAACCTTTGACACGACATGATTTATTTCATCAGACTTTAAAataggctgtttttttttttttttttttaaatgccaagctgctttatttttatgataacTGGAGACgatgctggaaaaaaaagtgttgtagTGTATAAAATACCTAGAACATATGTATATGTTGTTTTAACAATTAAATTTTGAAATTAAGTGCTTAGATCTTTATTCAGAACAATTGGATGCTCTCTCTTTGTTCTTccaaaaatgaaggaaaatatGTATGAGCTGTTTCAGTGGAATTTTATGACATACCTTTTCAAGGCACAAAAATACAAAGTCTATGCAGTCTTCCATCTTCTCAAAAAGTTAAGAAAGCTATAATAAAATTCAAAGTCACTGGGTTCTGCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132549 lncRNA downstream 212141 9705937 ~ 9706232 (-) True G112161
TU132527 lncRNA downstream 364695 9553026 ~ 9553678 (-) True G112144
TU132524 lncRNA downstream 367321 9550812 ~ 9551052 (-) True G112141
XR_003404367.2 lncRNA downstream 431304 9481256 ~ 9487069 (-) True LOC113542930
TU132387 lncRNA downstream 517794 9400354 ~ 9400579 (-) True G112026
TU132856 lncRNA upstream 13116 9959642 ~ 9963979 (-) False tmsb1
TU132864 lncRNA upstream 18181 9964707 ~ 9965338 (-) True G112454
TU132863 lncRNA upstream 19259 9965785 ~ 9967443 (-) False LOC113542827
TU132869 lncRNA upstream 23851 9970377 ~ 9970649 (-) True G112459
TU132886 lncRNA upstream 56253 10002779 ~ 10002992 (-) True G112473
XM_034305798.1 mRNA downstream 1208 9905958 ~ 9917165 (-) False znf711
XM_034305799.1 mRNA downstream 1212 9905958 ~ 9917161 (-) False znf711
XM_026940392.2 mRNA downstream 1467 9905958 ~ 9916906 (-) False znf711
XM_026940393.2 mRNA downstream 1467 9905958 ~ 9916906 (-) False znf711
XM_034305801.1 mRNA downstream 1613 9905958 ~ 9916760 (-) True znf711
XM_026940603.2 mRNA upstream 13050 9959576 ~ 9964000 (-) True tmsb1
XM_034305669.1 mRNA upstream 20254 9966780 ~ 9973795 (-) False LOC113542827
XM_026940612.2 mRNA upstream 20254 9966780 ~ 9973793 (-) False LOC113542827
XM_034305668.1 mRNA upstream 20254 9966780 ~ 9972006 (-) True LOC113542827
XM_026940551.2 mRNA upstream 34608 9981134 ~ 9992732 (-) True prps1b
XR_003404336.2 other downstream 325048 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404370.1 other downstream 1436310 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 4089815 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 4120437 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 4229534 5687579 ~ 5688839 (-) False zgc:113229
XR_003404347.2 other upstream 1313583 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 1412612 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 1665447 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 1872352 11818878 ~ 11858016 (-) True G113674
XR_004578392.1 other upstream 2162318 12108844 ~ 12112201 (-) True LOC117597634

Expression Profile