RNA id: XM_026940674.2


Basic Information

Item Value
RNA id XM_026940674.2
length 2445
RNA type mRNA
GC content 0.40
exon number 17
gene id btk
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12437839 ~ 12492799 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACACTTTCTGAATAGGAGGAATAGAGAAGTCACCACCAAGACTGCCTCTAAAAACTGTTCACAGGACATATTGGAGAAAAACTATCAGataACGTCATATCTGAATGAACAATGTCAGATAACATGCTGGAGGAGGTTTTCATAAAGCGCTCTCagcaaaagaagaaaacttCACCCTTAAACTTCAAAGAGAGATTGTTTGTACTCACACAGGAAAAGATTGCATACTACGACTATGACTTTGAAAAAGGGaaaaagaaaggattaAAGGGATTTGTTGACATTGACAAGATTAAATGTGTTGAGATTGTGATACCAGAAGACAATGCTCCTCCTGAAAGATTGTTCCCATTTCAGATAGTCTATGACGAGGGACCACTCTACATATTTGCCAAAACAGATGATATACGAAAGCAGTGGATACATAAACTAAAGCATGTGGTGCGGTTCAACAAAGACCTAATGCAAAAATACCACCCCTGTTTTTGGGAGGACGGCGTATGGAAGTGTTGCCAACAGGAAGTCAAACAGGCTATGGGCTGTAAAGTGCTGGAAATGAGAAATGGAGGATTTTCCACAGGATCCCGGCGTAAATCTAGAAAACCTCTCCCACCAACACCAGAAGAGTTGCCTCAGGAAAAGCCCTCTACATCTTTGCCCCAAGAGCCACCAAAGCAGCATGGCTTCTCAGTGGGTATGACAGTCATTGCTGAATATGAGTACACTCCCATGGCACCCCAAGACCTGGAGTTGAAAAAGGATGACGAATACACAATTTTGCAAATATGTGATGCCAACTGGTTTAGAGCCAGAGATAAACATGGCAATGAGGGATATATTCCAAGTAACTATGTTGTTGAGGCCTTAAATGGATTGGAGAAGTTTGAATGGTATTGCAAAAACATGAACCGCAGTCAAGCAGAAAATTTACTTAAGTCTGAGaataaaGATGGTGGCTTTCTGGTGCGAGACTCGGGAAGATACACTGGAAAATATACTGTCTCCGTTTTCACCAAGGGCATTGGAGAAATGGTTGGCAGCTGCCGACACTACAACATATTAACCACTCAACAAGGACAGTTTTACCTGGCAGAGAAGCATTATTTCGGTAATATTCCAGACCTCATCAATTACCACCAGCACAATGCTGCAGGACTGGTGAGCAGACTAAAATACATTGTGTCAAATCGAGCTCAGAACGCTCCATCCACTGCAGGTCTGGGTTATGGAGTCTGGGAGATTGATCCCCGCCAACTcacttttattaaagaattaggCAATGGACAATTTGGGGTTGTTAAGTATGGAAAGTGGCAGGGTCGGCATGACGTAGCCATCAAAATGATCAAAGAGGGTTCTATGTCAGAGGATGATTTCATTGAAGAGGCTAAAGTCATGATGAAACTTCATCATGAAAATCTAGTTCAGCTGTATGGTGTTTGCACAAAACAAAGACCTATTTACATAGTAACGGAGTTTCTTCCCAATGGATGCCTACTGACCTACCTACGGGAGTCCCTGCGACACCCCTCTGCTGTTCAGCTCCTTGAGATGTGTAAAGATGTGAGCGAAGGAATGGCCTACCTAGAATCCCAACAGTACATTCACAGAGACCTTGCTGCCAGAAATTGTTTAGTGGCTTCAAATGGGACAGTTAAAGTGACTGATTTTGGACTGTcacgGTATGTCCTTAATGATGAATATACTAGCTCTGCTGGCTCACAGTTCCCTGTACGCTGGTCACCTCCTGAAGTACTCCTTTACCACAAATTCAGCAGCAAGTCAGACATCTGGGCATTTGaAACCAGATGAACGGCCCACATTTCAAGATCTTGTGCTGGTCATTCAGGATTTGCTTGACAATCTGCACTAGACCGCAGACCTAGTGACAGTAAATGCCTGATTATGAGGGTAGCCCTGCAAAAGAGATAAAGACTTAGTCATGAACTGCAGCTACATTTAAGATTAGTAAACATAAATAGATTATTTAAGATTTTGTGTAACTTTCTATATGAATgctttttatattatgtttCTACTTTTTGTCCTCTCAAATTGTAATGTTTACTGTATACAATTCTCCTCAGTTTCCAAAGTCAATTATCAGTTCCAGATATTATTACATGAATGTACCTacaaaatcaaaattaaatattttgattGCTTTGCACTGCATGAAAAGAGCTGAATATGGAACAGTAAACTCCAGCTTACACAGCTAAAATATGGATGTATCCTAGAATTTGATGCCCAGAAAGGCTTAATTCCACCGGTTTGCAAAGATCCAAATAGTTTCGGATAATGGAGTGTTTcatgaatgaatataaatatggaTGGATATGTGATTCGCCCATGCAGTAGCGGCCTGCACAGTAAAGTCATAAATGAAATTCCAGTGcagtcataaaataataaaataaataaaatgaaaaacaaaagaatca

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134584 lncRNA downstream 58346 12379277 ~ 12379493 (-) True G114001
TU134537 lncRNA downstream 60059 12377313 ~ 12377780 (-) True G113961
TU134530 lncRNA downstream 68896 12321331 ~ 12368943 (-) False G113959
XR_004578438.1 lncRNA upstream 8381 12501180 ~ 12503970 (-) True LOC117597691
TU134688 lncRNA upstream 17071 12509870 ~ 12512353 (-) True G114095
TU134689 lncRNA upstream 20030 12512829 ~ 12514622 (-) True G114096
TU134699 lncRNA upstream 25856 12518655 ~ 12522672 (-) True G114103
TU134774 lncRNA upstream 71949 12564748 ~ 12564968 (-) True G114169
XM_034306173.1 mRNA downstream 127676 12298166 ~ 12310163 (-) True LOC117597734
XM_034306174.1 mRNA downstream 127680 12298166 ~ 12310159 (-) False LOC117597734
XM_026940665.2 mRNA downstream 262934 12169708 ~ 12174905 (-) False LOC113542864
XM_026940666.2 mRNA downstream 262942 12169708 ~ 12174897 (-) False LOC113542864
XM_034305660.1 mRNA downstream 325623 12079524 ~ 12112216 (-) False LOC117597634
XM_026940609.2 mRNA upstream 8141 12500940 ~ 12504810 (-) True timm8a
XM_026940795.2 mRNA upstream 34692 12527491 ~ 12549282 (-) False atoh8
XM_026940794.2 mRNA upstream 39839 12532638 ~ 12549281 (-) True atoh8
XM_034305621.1 mRNA upstream 42886 12535685 ~ 12549293 (-) False atoh8
XM_026940457.2 mRNA upstream 88657 12581456 ~ 12662949 (-) False spdl1
TU134600 other downstream 13782 12423728 ~ 12424057 (-) True G114013
TU134534 other downstream 75567 12332756 ~ 12362272 (-) False G113959
TU134531 other downstream 87311 12321331 ~ 12350528 (-) False G113959
XR_004578392.1 other downstream 325638 12108844 ~ 12112201 (-) True LOC117597634
TU134224 other downstream 579823 11818878 ~ 11858016 (-) True G113674
TU134687 other upstream 8172 12500971 ~ 12504801 (-) False timm8a
TU134690 other upstream 23559 12516358 ~ 12518194 (-) True G114097
TU134829 other upstream 201972 12694771 ~ 12695509 (-) True G114215
TU135100 other upstream 1054713 13547512 ~ 13550775 (-) True G114460
trnae-uuc_1 other upstream 1716117 14208916 ~ 14208987 (-) True trnae-uuc_1

Expression Profile