RNA id: XM_026940692.2


Basic Information

Item Value
RNA id XM_026940692.2
length 4047
RNA type mRNA
GC content 0.45
exon number 13
gene id ccdc142
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 8462550 ~ 8472613 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGGCGCTATTTGGGACAGGGCCGTAGACTTATTTGAGTGTTTCCATGTTTTCTTGCTTATGCAACACACATTTTACAGAGTTTTAATACTGGACTCAGGCATGTCTCATATGAGCTCATAAAGCTCATAAAGCTCTCCGGGAGATGTTCCCTGCTACAGTTTGTGTTACAAAGAAGAAGCTGTTTAAGTAGCTAGCCAGGTGAAATGGGAAAGCTGAGTTAGTGAGCTGAAGAGAGAATGGCTCAGGCATCCAGTAGCCCTCAGGAAGGACACAGTGAGGCTGAACCCtgcaacaaaacacaaacacatcctcATACTGCAGACAGAGGACTGCCGTCTGCTGTGACTGACAGCTCTGAGCTTCAAGCCTCTGATACGGACCAGGTCACTTTGAGAAAGCCAAACAGTTGTCCAGAAATACTTCCTGAAAAATATCGGTCAAAGGACAAACAAGATGGTTCTCAGTACCAGGGCCCGTTTACCAAGTCCCGTCAGAAGACAGATCCTCTTTTTCAGAAACGCTTCAGTCCCAATCTTAAACATCTCCTGAGACAGAAGAGTGACAGTTCCACCTGGAACTATGAAAATGAAGATAATTTCGTAGCATGCCAGGACCTTACCTCTCGATCTTCCCAACGCCTCCAGCACCTAGAACACACTTTATTGAGTCTCAAGTCTCAGTGCCATGTACTGCGTGGATCAGGAGGCTGTCTGAAAGGGTGCATTAAAGGACTCTCCCCTTCAGCAGAGGAAGAATTTTACCACCACCCTCAGGCAGCAGCCTTTAGCCAGCATTATGCACAACTCCAGCACCTTCTGGAACAACGGGCTcagctcctcttcctccatgAGTATGGCCGTTGATGTCGCGCAGCTAACTGCTTTATATCACGATTGGGTGATGTGCTGGAGAAAGCCCATCTCTTAGCCAGCAGGGCTCAAAGTTCAAAAGAACAAGCCAACTCTTCCTGGAACCTGGATCTTAGGGCTATGTGTGAGGAACTGCAAGTCCACATCAGCCACTGGGACATGCTATATGCCCGAGCGCGCTCTGACCCCTTCTTGCGAACTGTTTTTTCCAGTCGCACAGAGATGCTAGGCTTGATGCAGAGAAAGCTGTGGTTGCTGGCACAGCAAGCCTTGCTGCTGATGGAGAATTGCATGCACACATTGCTTAAAGCCTTAGGTGCTGCTCAGCTGGTTTGTGTACCCAGAGATGCCTTAGAGGACATGCTGTCTGCTGTGGAGATATACAATCATGTCGTAGCAAACCCAAGGTCCCAGAAAAGAGCTGCAGCCTGGAGTTTGCAGATTTTGTTCAACTCTGATTGTTCTCAGACCAAGCCAGACTTGGCCAGGAAACACGTCAGACCTGGAACATTGTTAGTGGTGGAAATCATGAGGATCGTGGCACGGCATCGAGCTCAGATAGCAGCCAGGCAACTTTACAGCTGGACATGCCAGCAGACTGATCTTCTTTCTCTTGCAGGACAAACCAGCATGAAATGGGGGGACTTGGATTGCCCGGATCTTCTTGTTGCACCTACTTCAGATCAATCTAGTTCTATCCTGGACAAGTCCCCTAAAAAGCCCCTCCAGTCTTCCAGTCTTcctttgtttgtgtttgctcaCTGGGATAGAGAGGACATTCTGGAAACTCTCTTTCAAGTCTTAGTATCCTCAACAGACCTCTTAGCTCCACACATTCCCAAAAGACCTCCCAAAAGACATCAGTTGGATAGGAGTGCTTCTGCAGAGAGGAGCCGCAGAGCCAGTGGACAAGAAGAAAATAACAATCCAAAAAAGTATCCCTCTCATATCCAAAACACTGTTCAGCGCATGGACCTGAGCAACACGGATGCATGTGTGGCACTTTTCTCTCAGTACAGGGATATGCTGTGGAGGGAATTTGGCAAAGCAGTTATCAAGCATTTTTATTATCCATCTCACAACAGTATTTTGGGTGGTATGTACCAGTGGAATGATCAGATGGTGCTCCTTCTGGTCAGATGGCTAAAGCAAGCATGTAAAGAAGAATGGGTTCCAGCTGAATGCAAGGATGTCTTGAATAAATTCTGCTCCCATATTTTATCTGCTGCTGCCTTCATGCACTGGGATGCAATAATGTGTGAGTCGCTGGGTTTAGGAATGAAGGATAAGTGCTCACCGAGAACCACGACAGAACCTTCCACTGTGAGAACCGCCACCATGGAACTTACACTCCAGCTGTTCCCTCCTCTGCTCTCTGTGCTCCAGTTACTGCAAACCCCACACACAAACTTAGGAGAGAAGGGAACTCTTGGTTTGTATCACCTAGGGTTGCTGTGCAGGGCCCAAGCCACTGTCCAGTCCTCTACTTTCTGGGTTATGAGTAAGGCCTACCAGTTTCTGGCCTCGTGGTCTCTTACTAAGTTTGTGCTGGTCACACAAGGAGACCTCAAGgCTCTCAGGGAGGCAGTGGAGAGTCTAGTGCAGGAGCTGAACGCTGTGGTTGGAAgcactgatcatcatcatcatcatcatcatctcatcatggaACATGGCCTGCAGCTATCTGATGCAGTCTCACAACTACAAGCCTTCTCTGAACTTGTCCTGAGGATTTTTTCGATGGACTGCAAGAAAATGTCAATGGAGATTTTTGAGCAAACAATGCCATCAGCAAAACACTGGAGAGTCAACTATAAAACAGAATTACCCAGCACCCCGAGTGATTATGCAGCCTTTGCAGCTCAAAGTGTGCTTGGCCAGGTGTTAGAGGGAATGCAGCCCCTACCGGATGAGACTCGTATTCCAGCACTGGCAGAGGCCATGACTGCCTTCATGGAGGCCTGGATGGAGCACATACTCAAACAGAAAATCAAGTTTAGTGTTCATGGAGCACTGCAGCTGAAGCAGGATTTTGACCTGATTCGAGAGTTGATTCGTTCAGAGAAGTACAGCCTGTCAGAGGAGCTACACCACCGGCTCCTGTCGTTGCGCGTCTTTCATCAAGTGGACAGCGCCATAGTGTGCCTGCTACAGCAACCTGTAACCAAAGCATACATGCCCTCTTTAAGATGGGAGCCTTTCCGACACTGCTgCCCAAACAGGGCCCAGGTGGTGGACCAGGCAGTTGGAAGCCTCAATAGTCTGGAGACTATAGACATCCAGGCTGCCTGTCACCAGGCCTTGACTCGGGCAGAAGGCTCTGTGAGCCCTGAGCTGCTCTCCACAGCTCCACCCGAGTCCTACTTAGCTGTGGCACAGCAGGAGTGGCTGGACCTGCGCATCCACACCAGCTCTCGCTGGAGGATCCCTGGTCTGCGTTGTCTCACTAAATCTGAGCCCTAAAAAACTGATGCAAAGTGGTATGTTTATGGTAGTAATATATCATTTGTACAACAATAGACAATAATCCTGTACTAATATGACACTTATATGCACCACTGACCACTGCTGTATAAAAACGAACATTTAATCGTCATTTAACTCTGAATTACCAATATGAAGTACTTTCAGAACAGTTAACTTTTTGTTAACGAAACAATTTCTTTTATAATATTTCCAACATATGCAGATTGTCACAAGTAGACAACCATTAACATGTTTAAAATTCAGTttagtaggttttttttttgtagtcttTTGTAGTATGTATTAATTATAGCAGTTCATAATCTATTATTCATAATCtaagtttaaaaatgtacagaatgcacattagtttatttttttttgtattgttcaGATTCTGTAATAATGTAACTaatgttacagaacattaatgtaaatgtataagtTGTATGTGCAGAGGAACTGagattttgtgaattttgtttATGACTTCACTGTGTAGTTAAAACCAAAGCAAGTCACATATCTGGTGTATGTGGATAAACTGTTATTTGATACCTTTTTTTATAATGTGCCTTTTTATGTGTCTGATATATTAGgaaagaaatatgtttatatttattaataagagTGAATACAAAGCATTACTTAATATAAGCCATCTACTGTTTTTCCATCATGGAATggaataaaaatgctttaagtttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131665 lncRNA downstream 96968 8362373 ~ 8365582 (-) True LOC113542918
TU131666 lncRNA downstream 97680 8362373 ~ 8364870 (-) False LOC113542918
TU131695 lncRNA downstream 104661 8356402 ~ 8357889 (-) False LOC113542919
TU131697 lncRNA downstream 107538 8346968 ~ 8355012 (-) True G111438
TU131673 lncRNA downstream 148238 8314026 ~ 8314312 (-) True G111414
XR_003404361.2 lncRNA upstream 8586 8481198 ~ 8483677 (-) True LOC113542922
TU131811 lncRNA upstream 8588 8481200 ~ 8483664 (-) False LOC113542922
XR_003404369.2 lncRNA upstream 10167 8482779 ~ 8482981 (-) True LOC113542949
TU131827 lncRNA upstream 13478 8486090 ~ 8486321 (-) True G111532
TU131843 lncRNA upstream 84733 8557345 ~ 8557706 (-) True G111548
XM_026940744.2 mRNA downstream 66760 8392281 ~ 8395790 (-) False nkx1.2lb
XM_026940743.2 mRNA downstream 66760 8392281 ~ 8395790 (-) True nkx1.2lb
XM_026940772.2 mRNA downstream 97899 8362373 ~ 8364651 (-) False LOC113542918
XM_026940773.2 mRNA downstream 104604 8356254 ~ 8357946 (-) True LOC113542919
XM_034305874.1 mRNA downstream 164528 8280009 ~ 8298022 (-) False ergic1
XM_026940758.2 mRNA upstream 1059 8473671 ~ 8478954 (-) True slbp
XM_026940696.2 mRNA upstream 14224 8486836 ~ 8503034 (-) True fhdc2
XM_026940770.2 mRNA upstream 81954 8554566 ~ 8557276 (-) True cetn2
XM_026940731.2 mRNA upstream 116728 8589340 ~ 8594245 (-) False fut11
XM_034306206.1 mRNA upstream 116728 8589340 ~ 8594105 (-) False fut11
TU130424 other downstream 2633992 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 2664614 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 2773711 5687579 ~ 5688839 (-) False zgc:113229
TU129845 other downstream 3244531 5204762 ~ 5218019 (-) True G109827
trnaa-ugc_1 other downstream 4065683 4396796 ~ 4396867 (-) True trnaa-ugc_1
XR_003404370.1 other upstream 9383 8481995 ~ 8482063 (-) True LOC113542950
XR_003404336.2 other upstream 1115216 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404347.2 other upstream 2787497 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 2886526 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 3139361 11611973 ~ 11612569 (-) True G113516

Expression Profile