RNA id: XM_034306206.1


Basic Information

Item Value
RNA id XM_034306206.1
length 2233
RNA type mRNA
GC content 0.48
exon number 4
gene id fut11
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 8589340 ~ 8594245 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATGCATGATGGGATAGTGTTTGTTGCACTGAAATGCAGGGGTCTGCGTGCTGGGaagctgctgcttcttcttcttctttcatggGAGCAAATTAGGGAACAGTTTGTTATTCCATGGAGTTCTCCACCCTGAGATCatgaaaatgtgctttaaaGAGGTTTTTGATGGCTGTCGAGGCTGGGTTTGTGCTCTGTTTGTGGTTTttgcagctgtgtgtgctgcCATGCGCAGGACAAGAGCCAGTAGACCTGAATGCTTTCCAGCCCCAGAGTGCTCTCACGGACATGGAGTTTGTTAGTGTGAGCTCCTACCGAGGCCCGGGCAACACAGACACCCGCAGCAACAAGGAGCTGCCCATCCTGCTGTGGTGGAGTGCCAACCTGTTCCCACACTTTCCAGGGGATACAGAGCGTGTGGACTGTGCTCGCTCGTCCTGCCTGGTGACACAAAACCGCAAGGTCCAGCTGCACCGGCGCACAGCTTCCATCATCTTTTATGGCACGGATTTTCGCGCCTATGAGGCGCCGCTGCCCCGCCTGCCTCACCAGACCTGGGCGCTCTTCCACGAGGAGTCACCAATGAACAACTACGTGTTGTCTCATGGGCCTGGAATCTGCCTCTTCAATTACACAGCTACCTTCCGCAGGGAGTCGGACTATCCACTCACACTGCAGTGGCTGCCATCACTCAACTACCTGCTTCagcctccctctgtctctctggagGAGAAGAACCGCTGGAGAAAAGCTGGACTGGCCCCAGTTCTGTACATGCAGTCTCATTGCGATGTGCCCTCAGACCGTGACCGCTATGTCCGGGAGCTTCTGAAGTACATACAGGTTGACTCATATGGAAAGTGTCTCAATAACAAGCCCCTGCCTGAGTATCTAGAGGACACCAGCACTGCCACAGGTGAGGACCGGCGCTTCATGAGCTTCGTGGCCCGCTATAAGTTCCACCTGGCCCTGGAGAACGGACTGTGCCCCGATTATATGACTGAGAAACTGTGGCGTCCCATGCACCAAGGATGTGTGCCCATCTACAAAGGCTCATCCTCAGTTGCTGACTGGCTCCCAAACGAGCATTCTGCTATTTTGATAGATGCTTTCGCCTCTCCTCAAGAGCTAGCTAGGTACATCATGGATTTGGATAAAGATGACTCCAAGTATTTGCGCTACTTGGAGTACAAGACGCCCAGTAAGATAACCAACCTCCGCCTCCTGGAAGGCCTTCAAAACCGAGAGTGGGGCATCAATGACATGAGCAAGCCCAATTACCTGAACGGCTTTGAGTGTTTCGTGTGTGACCGGGAGAACGAGCGATTGATGGCAGCAAAGAGGCACAGACGAGAGCCTGACAAGTATCCAGCACCCCAACCAAAGATggccaacaacacacacatgggGTGTCCACTTCCTAGCCCTGGGTATGGAGCCATAGAGGAGATTGACCCCAATGATGGCTGGCTGCAGATGTGGCCACAGGACTACTGGCAGAGTCTGGACCAGGCAGAGGGACTGGTGTCTCTGATAAATCACAACGAGTCTGACCCTAGTCTGCTTTGGCAACACATTCACAGAATGGCTATGAGCAGGAAAGGACAATGACATGACAGAACCTCTGAGAAAGAATGTTACCCCGTGAACTTGTGTATgagaagaatttttaaaatgaaggaCCACTTTATCTCTACCAAACACACTCATACCAAAGACAAAATACACACTAAAGAACAACTGGATCGAACTCAGCTAGCAGTGCAATCATTTTTGACTCGTTAATGGGTCACTTAGCTAAGAGCCAAAACCAGAGATAGCAAAAAGGTCATTTTGTAAACAGTAAACGTACTACATCTATACATTTCATATGTAGGTGATTAGTTTCTGTTTTGACAGTGTTATAAGAGGGCTGTTTAAATCATATTTGGAAACACATTAGAACATGATCTGCATATGAATAGGAtcattctgtttctgtttatcaGTGCAGCTGTTATGAACAAGCCCTTACGTGctttatgaataatttatttttcaggatGCTGAACTTGACATTTAAATTCAGCTGCTGTTCTTGTCAAATAGAAAACTGCTTTTTGTCTTCCAGGCATTTTTAGCCTTTTAAATGTGCACATATGTAAGCATTTTGATACCAGTAttctatataatatttatttattttttacactttgtAATGAGCAACAATTAAAGAGATATACTCCATAAACTTTA

Function

GO:

id name namespace
GO:0036065 fucosylation biological_process
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046920 alpha-(1->3)-fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131843 lncRNA downstream 31634 8557345 ~ 8557706 (-) True G111548
TU131827 lncRNA downstream 103019 8486090 ~ 8486321 (-) True G111532
XR_003404361.2 lncRNA downstream 105663 8481198 ~ 8483677 (-) True LOC113542922
TU131858 lncRNA upstream 22601 8616706 ~ 8616942 (-) True G111559
TU132127 lncRNA upstream 349378 8943483 ~ 9003847 (-) False LOC113542737
XR_003404340.2 lncRNA upstream 382301 8976406 ~ 9003813 (-) False LOC113542737
XR_003404339.2 lncRNA upstream 382301 8976406 ~ 9003781 (-) False LOC113542737
XR_003404338.2 lncRNA upstream 382301 8976406 ~ 9003777 (-) True LOC113542737
XM_026940770.2 mRNA downstream 32064 8554566 ~ 8557276 (-) True cetn2
XM_026940696.2 mRNA downstream 86306 8486836 ~ 8503034 (-) True fhdc2
XM_026940758.2 mRNA downstream 110386 8473671 ~ 8478954 (-) True slbp
XM_034306212.1 mRNA downstream 116727 8462550 ~ 8472613 (-) True ccdc142
XM_026940762.2 mRNA upstream 8014 8602119 ~ 8612067 (-) False plp1a
XM_026940761.2 mRNA upstream 8576 8602681 ~ 8611677 (-) True plp1a
XM_026940703.2 mRNA upstream 30668 8624773 ~ 8630049 (-) True pcdh20
XM_026940705.2 mRNA upstream 30668 8624773 ~ 8630043 (-) False pcdh20
XM_026940522.2 mRNA upstream 55359 8649464 ~ 8804731 (-) True nlgn3a
XR_003404370.1 other downstream 107277 8481995 ~ 8482063 (-) True LOC113542950
TU130424 other downstream 2760782 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 2791404 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 2900501 5687579 ~ 5688839 (-) False zgc:113229
TU129845 other downstream 3371321 5204762 ~ 5218019 (-) True G109827
XR_003404336.2 other upstream 993723 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404347.2 other upstream 2666004 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 2765033 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 3017868 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 3224773 11818878 ~ 11858016 (-) True G113674

Expression Profile