RNA id: XM_034305633.1


Basic Information

Item Value
RNA id XM_034305633.1
length 1408
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC113528773
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 15069823 ~ 15071886 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAATTATCATGCGCTGCTGCCCgcagagagaaataaacacgCTGATATTGATATCCTTTGAAGTTCACTAGAGGCGTTTCCTCCACTTCGCTGGCAGCTGTGGACCAATAGTATGCCAGGAATTCTGTAACAAAAGGTGACCCCCCATCAGCCCCAATGTGGATTGTATAAATTTCTAAAACCTGTTTCAATTGAAAGATCAGATCTTCATCATTTACTCTGGTAGCTACGTGATCTCGCAAAAAATGGGTTCATCCTTCCTCTGGGCTTCTATATTCCTTATTTATCACAAAACTCTCTTAGGGCACACATGGCTTGTTAACAATTTGCTCATGACTGGACCAAAAGCTTATTTAAGCTACACGAGTAGTGTTCTTGCTGGAGCCCAAAACGGCATGCAGGAGTGCAAGCACCAGTTTGCGTGGGACAGGTGGAACTGCCCGGAGAGCACATTTCACCTCTCAACTCACAGACGGCTCCGAAGTGCGACGAGAGAGACGTCGTTTGTCCACGCGATAAGCGCAGCTGGTGTCATGTATACTTTAACCAGAAACTGCAGCCTTGGGGATCTGGACAACTGCGGATGCGACAACTCAAGAAATGGTAAAATTGGGGGTCGTGGCTGGCTATGGGGAGGTTGTAGTGATAACGTGGACTTCGGAGAGAGGATCTCCAAGCAATATGTGGACGCATTCGAGACTGGACAGGACGCCCGTGCTGCTGTCAATCTTCATAACAACGCGGCAGGCCGTCTGGCAGTAAAAGCGACTATGAAAAGGATCTGCCGCTGCCACGGCATGTCGGAGAGCTGCGCAGTGCAGACGTGCTGGATGCAGCTGGCCGAGTTCCGTGAGGTGGGCGATTACCTGAAAGTGAAGCACGACCAGGCGCACAAACTTGAGCTGGACAAACGGCGCATGCGCGCGGGGAACAGCGCCGACAACCGCGGCGGCGCTATCGCGGACGCGTTCAGTAGTATCGCGCGCTCCGAGCTTATCTATTTGGAGGATTCCCCTGATTACTGCGCGAAAAACCTGAGCCTTGGACTTCACGGCACGGAAGGCAGGGAGTGTTTGCAGAGTGGAAAGAATCTGTCGCAGTGGGAAAAGCACAGCTGCAGAAGGCTGTGCCACGAGTGCGGCCTGCGCGTCGAGGAGATCCGCACCGAGATAGTGAGCAGCTGCAACTGCAAGTTCCACTGGTGTTGCACGGTGAAGTGCGAGAACTGTACGCAGGTCATAGTAAAGTACGTTTGTGCACGGAGACAAAGTGGCCAGGGACACAACAGACGCAGACTTCGAGGACCAAAATGACTGCGCCAATGTTTGGGGACTCAGTTACAACCGACTTCCCTGCActtctctgtaatatttttagGTTATAGATCATTCTACCTTTTGTACATa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578406.1 lncRNA downstream 53450 15007711 ~ 15016373 (-) False LOC113528719
XR_004578405.1 lncRNA downstream 53997 15007711 ~ 15015826 (-) True LOC113528719
TU136099 lncRNA downstream 265632 14803454 ~ 14804191 (-) True G115331
TU136097 lncRNA downstream 283805 14785329 ~ 14786018 (-) True G115329
TU136072 lncRNA downstream 297020 14755334 ~ 14772803 (-) False ebf1a
TU136210 lncRNA upstream 8922 15080792 ~ 15082469 (-) False tmsb2
TU136278 lncRNA upstream 61327 15133197 ~ 15133435 (-) True G115477
TU136359 lncRNA upstream 246870 15318740 ~ 15318949 (-) True G115553
TU136360 lncRNA upstream 249150 15321020 ~ 15321301 (-) True G115554
TU136440 lncRNA upstream 328697 15400567 ~ 15402679 (-) True G115620
XM_026917548.2 mRNA downstream 16445 15051360 ~ 15053378 (-) True foxi3b
XM_026918306.2 mRNA downstream 27324 15039603 ~ 15042499 (-) True pttg1
XM_034306004.1 mRNA downstream 138563 14917996 ~ 14931260 (-) False sh3tc2
XM_034305631.1 mRNA upstream 128 15071998 ~ 15076599 (-) False LOC113528772
XM_026917477.2 mRNA upstream 128 15071998 ~ 15076305 (-) True LOC113528772
XM_034305632.1 mRNA upstream 128 15071998 ~ 15075836 (-) False LOC113528772
XM_026917575.2 mRNA upstream 8914 15080784 ~ 15082504 (-) True tmsb2
XM_026918542.2 mRNA upstream 226483 15298353 ~ 15314460 (-) False lonrf1
trnav-uac other downstream 601198 14468553 ~ 14468625 (-) True trnav-uac
TU135547 other downstream 847968 14220316 ~ 14221855 (-) True G114873
trnae-uuc_1 other downstream 860836 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135100 other downstream 1519048 13547512 ~ 13550775 (-) True G114460
TU134829 other downstream 2374314 12694771 ~ 12695509 (-) True G114215
TU136727 other upstream 779151 15851021 ~ 15852220 (-) True G115842
TU136942 other upstream 996865 16068735 ~ 16071362 (-) True G116014
TU136943 other upstream 996865 16068735 ~ 16071362 (-) False G116014
XR_004578451.1 other upstream 1034909 16106779 ~ 16115433 (-) True arr3b
XR_004578453.1 other upstream 1453760 16525630 ~ 16550675 (-) False zic6

Expression Profile