RNA id: XM_034306009.1


Basic Information

Item Value
RNA id XM_034306009.1
length 5108
RNA type mRNA
GC content 0.46
exon number 17
gene id sh3tc2
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 14917996 ~ 14932160 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAATGCCATAGGTGCTTTGGTTATTATGCACAGAGAACAAGTCAAACCAGATGGATTGCTTTACTACTAGCTGTAGAAAACCTGTGCCATTCCTTCTCACATGCTCTATAGGCATTGGATTGTTAAATAGTAGGGGATATAATGAAGGAATgaggaaaagattttattttatgggtAAAAATCTGTTTGAATTGTTCTTAAATGTTgtcatttggtttgttttcctCCACTTTCACTACCTGAGAACTCCAACAGCGCAGttagcaaaaacacacacacacacacacacacagagtgctcaGAGTTGATAAGTGAGATACTGACAGAGGCAGAAGGAGAGCGaaacagtgacagagagagagaaagggagtgaTATTTAGAGGTGGAGTTTATATACTTCCTCTGTGTAGTGTCTGTCTTCTCTTCAGATGCATGCAACaacgacacacacactgctctacaGCGGCTTTTAAGAGAACCATGAGAGTTTCAGTTTTAGAACTGTGTGGGTGAGGGGAGAGTCCTTGCTCCCCGTGCTGAAAACATACTGGCACTCCTATGATGGACGAACACACCGGCAGGAACCAGCAGGACAGAGGAGATGAGGAAGTGGAAACAGAGGCTGAGGTGGAGGGTGAGGGGATCACTGGTGAGAATTACTGGAAGAGGAAGGAAGCTCTCAGCAATGTCTCCTTGGCTGTAGGAGATCACTTCTCTTCAGATGTGATATTGCTGTTCAGTGGGAGAAAGCGTTCCAATTTGGAGCCGGACAGTGTGCTGCAGGAGGCACTGCGCACTAGACTAAGGGTCGTAGAGAGCAACAGCCAAGATGTTATTCAGCTTTTTAAAGATCTTTCTGCACGCTTGGTTTCAGTACATGCTGAAAAAGACCATTTTGTTATTACCTTTAAGACAGTGGAGGAAATCTGGAAGTTCTCCACATACCTGGCTTTAGGATATGTAGCAAGGTGCTTGGAGAACTTCCTGTGTGACCAGTCTTTCTGGCTGGACCCTCTTTTGCTCAGTGATGTGGAGATTTGTGTGACGGTAGATGAGGAACACCTAGCCACACTCTATCTGGGGCTCCTACTTCAAGAAGGTTCATTCTTTGCTAAAGCTCTGGTTAACAGTGAGCAGTGTATAGAGGAAGAAGACGAATTGGTCTACAAGAAGAATGACCTTGTTATGGTGAAGGATATTGGACAGCAGTCCATGTGGGAGGGAACACTACTGTCTACCGGTCAACATGGCCTAGTGCCTGTTCATGCAATGCAGCCTCTGCCCTACCCTTTTTACCAGTGGTTTCTTAGGAAGTACCATGGCAATGCAGGAGGGTTTTCATCCACAAAAGGACAAAGTGACCAACGtatagTAACAGGAACTTGTGTAGCAGTAGTGGACCATTACCCAGTGGTTAAAGATGAACTGCACTTCAGACAAGGAGATCTGATAGAGGTTGAAGGCTTGCTTATTAGCTCACTGAACACGTTCATTGGGAGACACCTCACTAGTGGACAGATAGGATTTGTCCACATGGCCCACGTGAGACCTGAAAATGTCAAACCACTCAGTGGACAATTGGTCTTTCTGAGTGAGGAGGAGAGAGTGGCTCTCTCGCAGTTTAACCCATGCGTTGAGCAGTGCCACACTGGTCTGTTGGACAAACTCTTCTCCACTGACATCAGCACTGTTTACAGATTAGACAGACTGGATGACTCAGATTTTACCTATATTAGAAACCAACCAAAGCAAGAACAGAAAACCCCAGTAGATGCCAGGAAGAGTGTTATACTGGAACATAGTGATACCCCACCCTATCACTCCTCCCCTCGACCTTCCTTCTATGCTTCTCAGAGTTGTCTGGACAGGGACCATGAAGCCTTCTCCTTCAGCCTGGAGGACACTTTCAGAGAGATGGATGAGTATGAGGAAGATCCCCCCTTTATGGATGAAGGCATCTGGGAAACAGAAGAAGCTGAGTTTGTTGACCCCATCTTAACCCTCCTCAACCTGGACCACTTCCAGGACTCTTTTCATGCACTTTATGACCTCTCCTACTCCTTCTTGGACACAGTCTTTGGTGGTCTTCCGGTGGATGAGGTGCTCCTGCATCTGGAGAGCTTGCGGGAAGGAGCAAAGAAAGGCAGGATGGTGTGGGCCCATCGGCGAGCCTGCTTCCTTCTGGGCAGGTTGTGTGCCAAAAAGCTCAAGTACTCACAGGCTCGAGTTTACTTTGAGGAGGCACTGAGTGTCCCTGTAGAGGGCTTTAATGACAAACCTCTGTTGATTGCCCTGTATACCAACCTTACAGCTGTGTACCTGAAGCAGAAGATGACAGACAAGCTGCCTTATACATTAGAGAAAGCAAGTGCTCTTATACTGTGCCTCCCATTGCATAACTTCTGCTCTCTTGATGAGTTTGAATTGCTCAAGCCCATTCTACTCAAAGCTATTGTGGACAATGATAAGCAACTTGAGGCACGGACTTGCTATCTAATCCTCTGTCTATTTTTACAGAACAGAAAGATTGAGGAGGCCTTGCCTTTTGTGGAAAGACTTCAGTTCCTCAATCTCACTCTCTCAGCAGAACAACGAAGGCCTATAGGGCCAGTTGACCTTAACTGGATACTATGCAGGCTCTACCACAAGAAGTATCTGCCACACCTTGCATTAGCCTCTCTCAGTCTAGATTCAGGTCGGGATCATTCTTTGGATAATGCCTTTCAAAAGATTGAACTTTTCCTGAAAAACTCAGTCAGACTGAATCCTCGTTGGAAGGATGGCTCTGCTCTGCTCCCAGTCCAGGTGGTAGTTTACCTTCAGCAGGCATTGTCTATAGCCAACCGTGGAGAACACCTGAAGACCCAGAGAGATCTTTGTCTGAGTTTGGCCAGTGTCTACCAGCAGTATGGAACTTTGGAAAGGGCAGTCCTCTGTGCCCAACAAGCAGTTCAGGCAGGGATAGGCATTAATGAGGAGGAGGGCTTTGAGGCATCAGTGTTGCTGGCCTGGCTCTTAGTGCTCTCAGAGGAACCGGATAGAGCCCAATCTACTTTGCAACCTCTTCTTAACTCACTGAACAGAACAGACAGTCCAACACAGCGTGGAGTGGTCCACAATCTACTTGCGCTATGTCTTCACAAACAGGGGAAGGTCAGAGAAGCAGCAAGGGACTTTCACTGTGCTCTCAAGATTTCACAGGAAAATGGGAACAAGCATAATGAAGCTCTGGCTCTAGCTAACCTGGGGTGCCTTGCCTTATCAGTGGGGGCTCCAGGCCTGGCAGAGAGTTTCTTGCTCAGATCTCTGCACCTTTTCCAGTTTCTTTCTGAGAGCCCCTCAGATGAAGAGCATGTTCAGACTCTGCTATGGCTAGGTAGAAGCTACAAAGATAGGGGAGAAAGTCAAAAGGTTAGGCTGTGCTATGAGATGGGTCTTCTGATTGCCATCAGTGCCAAGAACCTGCACAgTCAGATGGTTGTAGCAAAGGTGCTCAGTCGTCTATATGCTGACTTAATGTTGTATGGGCAATGTATAATTTACTACGAGCACTGTGTGGGACTCTCCAGAGAAATGAAGGATAAACGTCTGGAGGGAGAGTACCTGGAGATTCTCAGTAATCTCTACCTATCACTTAACACTGAGAAGTCCTCACTGAAGTCTCTGGATTACACCAAGCAAAGTCTAAGGATTTCCATAGACTTAGGAAAGAAACAGGAAGAGTCAGAGACATGGCTACAGGTGGGCCGTATCTACTACTTGATCCATGAGGATGAATTGGCAGACATGTATCTTCAGGCAGCTGTAAAGACAGCTCTAAGGATAAATGATCCATGCTTTgctatgaacatttatgaagaGGCTGGAGATGTCTTCTTCAGTGGACACAGACACCGACTGGCTGCCGTTTCATTTTTTAGAGACGGGGGGCTGCCATTTGCAAAATGTATTAAGGATGTGCATTCAGAGTTCAGGCTTTTGTGTAAGCTCTCTGAATTGCTGCTGAAGGAAGGTCAGCACCAGGAGGCCCTGCAGTATGCGACACTTGCAGTGCACATCAGCACCTTAACTGGTGTACGCCTGAATGAGAGGGTGTCCTACCATCGCCTGGCCTCAATTTACTTCAATCTGGAGCAGTATGAGATGGCTGAGAATTATTATTTGAAggctctgtccctctctcccacTGCACTGGAACATGCAGAAGAGGCCCGCTACTATGTTAAAGTTTACTGCAGACTAGCTGATCTAACCCTGCACAAGATAAAGGATCCTTTTGATGCCATGGGATATTTCCACTTAGCCCTGGCAGCAGCTCTGGAAGATGGAGGAAGCCTTCAAGCCAGGTACATAATTTACATGAAGCTGGCAGAGATCCACGCTAACTACTTACCTGATGTGGAGCTGAGCCAGAGATATATGGACAGTGCACGGAGCCTAAAGAGGGAGCTGGCAGGACACACAGACTCCAGTGACACAGATGACGAATATATGAACCATGCTGCTACAGAGTATGCTGATACTAAGTCGATCAGTCATTCCAGTGATGGGTCAAGGAGCTCAGACTTCAGCAGTAGAAGTAGTACTCTTGTAGGCTCCTACATAATGGACACTAGCCATACAATAACTGCTCAGAAGGAGAGTGGGACAGAGGCTGTTCCTGCTGATTACATCTGCGGAGAGGATATGGACATCTGTAACCCGGAAGGGACTGACGGTGGGCTTGGACAGCATACAAATTCTGAAATAAGGCACACTAATCAAAGACTCCATACCAGCCACACAGATTCTAGCTTACTATGTACAGAATTTTGATCATCCTACCCGCACCCCGAAGGCACTTCCTTATggatatgaaatatttaaatatgttaattCATGTATCTTGTTCATGTACTTGATTCTTCCTCCAAATACAGGGgaaatgtctattgttaaagtactctgatttttttcagggcAAGAGCacttatgtatgtaaatattcttgtcagttttttttttttgtatattataattattacatcTAATTGAaaatcttttccttttttttctactttttgaAGAACTTATTTGAAGATGACTTATTAAAGTCTAATCAATCCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU136099 lncRNA downstream 113805 14803454 ~ 14804191 (-) True G115331
TU136097 lncRNA downstream 131978 14785329 ~ 14786018 (-) True G115329
TU136072 lncRNA downstream 145193 14755334 ~ 14772803 (-) False ebf1a
TU136092 lncRNA downstream 170003 14745939 ~ 14747993 (-) True G115325
TU135841 lncRNA downstream 377688 14540108 ~ 14540308 (-) True G115143
XR_004578406.1 lncRNA upstream 75826 15007711 ~ 15016373 (-) False LOC113528719
XR_004578405.1 lncRNA upstream 75826 15007711 ~ 15015826 (-) True LOC113528719
TU136210 lncRNA upstream 148907 15080792 ~ 15082469 (-) False tmsb2
TU136278 lncRNA upstream 201312 15133197 ~ 15133435 (-) True G115477
TU136359 lncRNA upstream 386855 15318740 ~ 15318949 (-) True G115553
XM_026918084.2 mRNA downstream 63738 14841180 ~ 14854258 (-) True il12ba
XM_026918119.2 mRNA downstream 94823 14786083 ~ 14823173 (-) True rnf145a
XM_034305997.1 mRNA downstream 95448 14786083 ~ 14822548 (-) False rnf145a
XM_034305996.1 mRNA downstream 101844 14786083 ~ 14816152 (-) False rnf145a
XM_026918162.2 mRNA downstream 143195 14675242 ~ 14774801 (-) False ebf1a
XM_026918306.2 mRNA upstream 107718 15039603 ~ 15042499 (-) True pttg1
XM_026917548.2 mRNA upstream 119475 15051360 ~ 15053378 (-) True foxi3b
XM_034305634.1 mRNA upstream 137938 15069823 ~ 15071886 (-) True LOC113528773
XM_034305633.1 mRNA upstream 137938 15069823 ~ 15071870 (-) False LOC113528773
XM_034305631.1 mRNA upstream 140113 15071998 ~ 15076599 (-) False LOC113528772
trnav-uac other downstream 449371 14468553 ~ 14468625 (-) True trnav-uac
TU135547 other downstream 696141 14220316 ~ 14221855 (-) True G114873
trnae-uuc_1 other downstream 709009 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135100 other downstream 1367221 13547512 ~ 13550775 (-) True G114460
TU134829 other downstream 2222487 12694771 ~ 12695509 (-) True G114215
TU136727 other upstream 919136 15851021 ~ 15852220 (-) True G115842
TU136942 other upstream 1136850 16068735 ~ 16071362 (-) True G116014
TU136943 other upstream 1136850 16068735 ~ 16071362 (-) False G116014
XR_004578451.1 other upstream 1174894 16106779 ~ 16115433 (-) True arr3b
XR_004578453.1 other upstream 1593745 16525630 ~ 16550675 (-) False zic6

Expression Profile