RNA id: XM_034306174.1


Basic Information

Item Value
RNA id XM_034306174.1
length 1444
RNA type mRNA
GC content 0.48
exon number 2
gene id LOC117597734
representative False

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12298166 ~ 12310163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCACGGATCCACACTTCGAAAATCTACCGGAAATAGCAGACCATCCGGGAAGAAGGGACTGCAGGATGACTTGGAAGCGTTCGTGGAGCTATTCGAGCGTGCCACAGCCACATGGGGATGGCTAGACTCACAGTAGCTGTCGCTACTGTTGGTGGGAGCCCAGCTCACGACCCAACAGCTTCTAGTCGGAGCCTGCTGAAGTACTCTGACCTGAAGCGGGCCATATTGCAATGGTTTCACTTGCTGTTTGCATTCACCTGCATACAACAGCTCCAAGACACCTGTCGAAGGTGGCTGCTGGCTGAGGAGCGCCACGCCGAGAATGTAGTCAACCTAGTGGTACTGGAGCAGTTCATCGCCAAGCTCCCGGAGGGGATGGAGgaatgggtccagtgccactgtctggCGTCGCTGGAAGAGGTGGTTCAGCTAGCTGAGGACCACTTGGCAGCATATCTGAGAACAGTCAGCTCCTCcctttctcgctctctcccctcctcctcACGTTTCCCTTGAGGATTTCCCCTTGGAACCGTCCCAAGACAAAACCCAAAGACACACCTTCGACCTAGTGAAAGTAATTGACAGTCAACAGGTTCAGCTCAACATTGCACTCCCCTGTTCCTACTTTGCGATTATTAAAGATACATAGATCATATTGAGTGACACAGGGCACTTAAACAGAAGAGGAGATGACCCAGTCGTTTGTCTCAAAGATCCATAGGGAATTGCTTTCCATGTGGCTCATCATAGTCCTGCGGCAGGCCATTAGGTCAAAAGAAAACACCGAACTGTCTAATGGACCATTTCTATTTGCCGGACATTTGTGGCGATGTTTGCCGGTGGTGTGCTGCATGTCAcgatgtcagctggtgaatccgccTACCTCTCCAAAACCGACATTGCACCCCTTGTACGGGGGCATCACTTTGTACTAGTCCTGTTGTACTACGGGACGTGATCCCCGTAGAAGCTGTGCATCTCTGCAACATCTCCTGCAGTACgagaggtcccacaagcctccaCGGGGTTCTCCCCATTTGAATTGCTATATAGGCGCAAGCCTTGCAGCATCTTGGATGTCATCAGAGAAAACTGAAAGGAGGGACCTTCCaagagtgaaaatgaaattcagtacattcttgacctgagagcaGAACTCCACACATCAGGACAATTAATGCAGGAGAATTTGCAGCAGTCTTCTGATATTTCATATAACTGCAATTATTTGTGAACTTAAAATGACAGTAAGCTGGCCAATTTCAATTAATTGTCTCAATACTCCCTCCATTTTACAAAGATTTGAGGACATGGAGGAGGCAAAAGGTACACAATTTGCAATATACACAAAATTATGTAtggaaactgatttttttttttgttaagattATGTCATCATGCACACCATTTTATTGGTAAAAGGCTAATTGGATAGAAACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134567 lncRNA downstream 5702 12291992 ~ 12292464 (-) True G113985
TU134561 lncRNA downstream 15112 12278822 ~ 12283054 (-) True G113979
TU134554 lncRNA downstream 34996 12258215 ~ 12263170 (-) True G113972
TU134525 lncRNA downstream 115070 12181365 ~ 12183096 (-) True G113954
TU134521 lncRNA downstream 123333 12169629 ~ 12174833 (-) True LOC113542864
TU134530 lncRNA upstream 11172 12321331 ~ 12368943 (-) False G113959
TU134535 lncRNA upstream 40521 12350680 ~ 12362272 (-) True G113959
TU134532 lncRNA upstream 52640 12362799 ~ 12368943 (-) False G113959
TU134537 lncRNA upstream 67154 12377313 ~ 12377780 (-) True G113961
TU134584 lncRNA upstream 69118 12379277 ~ 12379493 (-) True G114001
XM_026940665.2 mRNA downstream 123261 12169708 ~ 12174905 (-) False LOC113542864
XM_026940666.2 mRNA downstream 123269 12169708 ~ 12174897 (-) False LOC113542864
XM_034305660.1 mRNA downstream 185950 12079524 ~ 12112216 (-) False LOC117597634
XM_034305661.1 mRNA downstream 185958 12108843 ~ 12112208 (-) False LOC117597634
XM_026940548.2 mRNA downstream 235029 12025781 ~ 12063137 (-) True hdac3
XM_034305794.1 mRNA upstream 127680 12437839 ~ 12492799 (-) False btk
XM_026940674.2 mRNA upstream 127680 12437839 ~ 12492799 (-) False btk
XM_026940667.2 mRNA upstream 127680 12437839 ~ 12492799 (-) False btk
XM_026940668.2 mRNA upstream 127680 12437839 ~ 12492799 (-) False btk
XM_034305792.1 mRNA upstream 127680 12437839 ~ 12492799 (-) True btk
XR_004578392.1 other downstream 185965 12108844 ~ 12112201 (-) True LOC117597634
TU134224 other downstream 440150 11818878 ~ 11858016 (-) True G113674
TU134062 other downstream 685597 11611973 ~ 11612569 (-) True G113516
TU133937 other downstream 938587 11359138 ~ 11359579 (-) True G113398
XR_003404347.2 other downstream 972698 11260109 ~ 11325468 (-) False LOC113542749
TU134531 other upstream 11172 12321331 ~ 12350528 (-) False G113959
TU134534 other upstream 22597 12332756 ~ 12362272 (-) False G113959
TU134600 other upstream 113569 12423728 ~ 12424057 (-) True G114013
TU134687 other upstream 190812 12500971 ~ 12504801 (-) False timm8a
TU134690 other upstream 206199 12516358 ~ 12518194 (-) True G114097

Expression Profile