RNA id: XR_003404370.1


Basic Information

Item Value
RNA id XR_003404370.1
length 69
RNA type ncRNA
GC content 0.38
exon number 1
gene id LOC113542950
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 8481995 ~ 8482063 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCTGGGATGAACCTAATTCAACACATCATTCTTACTGTCAAGTGAAGAAACTTTAACACTGAGCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131665 lncRNA downstream 116413 8362373 ~ 8365582 (-) True LOC113542918
TU131666 lncRNA downstream 117125 8362373 ~ 8364870 (-) False LOC113542918
TU131695 lncRNA downstream 124106 8356402 ~ 8357889 (-) False LOC113542919
TU131697 lncRNA downstream 126983 8346968 ~ 8355012 (-) True G111438
TU131673 lncRNA downstream 167683 8314026 ~ 8314312 (-) True G111414
XR_003404369.2 lncRNA upstream 716 8482779 ~ 8482981 (-) True LOC113542949
TU131827 lncRNA upstream 4027 8486090 ~ 8486321 (-) True G111532
TU131843 lncRNA upstream 75282 8557345 ~ 8557706 (-) True G111548
TU131858 lncRNA upstream 134643 8616706 ~ 8616942 (-) True G111559
TU132127 lncRNA upstream 461420 8943483 ~ 9003847 (-) False LOC113542737
XM_026940758.2 mRNA downstream 3041 8473671 ~ 8478954 (-) True slbp
XM_034306212.1 mRNA downstream 9382 8462550 ~ 8472613 (-) True ccdc142
XM_026940692.2 mRNA downstream 9383 8462550 ~ 8472612 (-) False ccdc142
XM_026940744.2 mRNA downstream 86205 8392281 ~ 8395790 (-) False nkx1.2lb
XM_026940743.2 mRNA downstream 86205 8392281 ~ 8395790 (-) True nkx1.2lb
XM_026940696.2 mRNA upstream 4773 8486836 ~ 8503034 (-) True fhdc2
XM_026940770.2 mRNA upstream 72503 8554566 ~ 8557276 (-) True cetn2
XM_026940731.2 mRNA upstream 107277 8589340 ~ 8594245 (-) False fut11
XM_034306206.1 mRNA upstream 107277 8589340 ~ 8594105 (-) False fut11
XM_034306207.1 mRNA upstream 107277 8589340 ~ 8594105 (-) True fut11
TU130424 other downstream 2653437 5826230 ~ 5828558 (-) True G110290
TU130314 other downstream 2684059 5793847 ~ 5797936 (-) True G110204
TU130235 other downstream 2793156 5687579 ~ 5688839 (-) False zgc:113229
TU129845 other downstream 3263976 5204762 ~ 5218019 (-) True G109827
trnaa-ugc_1 other downstream 4085128 4396796 ~ 4396867 (-) True trnaa-ugc_1
XR_003404336.2 other upstream 1105765 9587828 ~ 9593325 (-) False si:ch211-153b23.4
XR_003404347.2 other upstream 2778046 11260109 ~ 11325468 (-) False LOC113542749
TU133937 other upstream 2877075 11359138 ~ 11359579 (-) True G113398
TU134062 other upstream 3129910 11611973 ~ 11612569 (-) True G113516
TU134224 other upstream 3336815 11818878 ~ 11858016 (-) True G113674