RNA id: XR_004578438.1


Basic Information

Item Value
RNA id XR_004578438.1
length 2008
lncRNA type intronic
GC content 0.38
exon number 3
gene id LOC117597691
representative True

Chromosome Information

Item Value
chromosome id NC_047601.1
NCBI id CM018547.1
chromosome length 30450434
location 12501180 ~ 12503970 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgactggtTATTGGCCGGGTCTGCcttgtttccttgttatttcatgacaaggtaaggagataaaaggtctggagttgattccaagcgttgaatttgcatttgggaGCTGTACATGGGTACTCTCAAtgtgtggtccaaagaggtgtcagtgcaagtgaaagaggccatcattaggctgaaaaaacaaccaGACCTACAAGAGAgctagcagaaactttaggagtggccatatcaacaatttggcattcttaaaaagaaggaatgcactggcaagctcagcaacaccaaaaacTCTGTAAGACTATGGaggacaactaaagtggatgatcacagaattgtTTCTTTGTTGAAGAAAACCTCTACACAACATCTatccaagtcaagaacactcaggaggagaaaaaactgaaggcagaagaACATACAGACAAGCAGctactgaaggcagctgcagtaaaagccTGGCAAAGTATAtgaagggaggaaactcagcaatTGGTGatgtccagacttcagGCACCTGACTGTATGAGAGTGAATGACAGCCCACACGTACTGCCAGAGGAATGCCATAACACAGCCACACCTCTACTAGGAGACAGCCAGATaagaaaatttgtaaaaatgtatgGCTTATAACTGTACAGCTAGATCAATGCAACAACATAGCCACTTCTCAATCAGAAGTGAACCATTGTAGAAAAGCTTATATGGTCCACATCTGGGCTTTATGTGGATTGTTTATATGGCTCACTTCTGGCCCTTATATGGCCCACATGTGGCAAACACACTAAAATCCAGTGGGACCTCAGTTCTTAACTGAAACTGCGTCATCTTCACTAACCTAAATTTtgaccttttaaaataaaatttgtttttgaataGCCACATAGGACTGCTCTAATAAAATGGAATGTATTTGTGACAGGGAGTGGaaagtgtgtatataatattatatatatataatattggtGTAATTGAAAAGTTTAAATTATAATTCAGATTCCTTGGCCCTAAACCATGAAGTGATTTATAGACAAGTACTGGTACTTTAAATTctgcaaaattaaaataaattttaaaaactgctgcacatgatgtaactgaaaggccatccagagttactctgaaagcttacttctagctgcctgttgtcctagtacaagtactacTATCTTGTCAGAATTTAGTAGAAGGAAGTTACTAAGCATCCattgtctaatgtcctttacataTTCCTTTGCTGAagtatacaactgtgtgtcatcagcataactgtgaaagctaataccatgtttatgaatcaTTTTACCTAGAGATAACACatagagaaaaaagcagtgggcctaaaacagagccttgtggaacaccaaactttactatactatgcatagagaagtcagcATTTAcctctacaaactgataacgttcagtcaaataagacctgagccatgagagggctgttcccttaactACAACAACATTTTCTTGTCTATCAAGAAGAATAATATGATCAATGGTGTCAAGCtgaggtcaagcaacacaagctaggaaacacaaccctgatcagagggtTTTAGCGAGCACTCTCTcagtgctatgatgaggcctaaatcctgactgatagatttcatgaatgttatttctATTTGGGAATGCTATAACTTTTTACCTATAAACATGCATTACTACTGGATATGATCATATAATGTTTGTTAATCTCCTACAACCCCATCCCACCGTTGAGAGCCTATTGACTATGATTCTGCTAGCATTTTTACAGAGCTTTTGTACAGTATATGGGAGCTACCTCCTTATGTTAATGCCTCCTTTTATGTTAATGTTCTTCTAACATTTACAGGAAGAGTCATATAGgttcctttttttcttatttattgcGGTTCTCTTCATCAGTTTTTGAACATGCTGTAATTCTGACCTATCTAAATACAACGTGAGTATTTGTAATCTCTGTGGTTTTATACTTGTgtggtgttgttttttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU134584 lncRNA downstream 121687 12379277 ~ 12379493 (-) True G114001
TU134537 lncRNA downstream 123400 12377313 ~ 12377780 (-) True G113961
TU134530 lncRNA downstream 132237 12321331 ~ 12368943 (-) False G113959
TU134532 lncRNA downstream 132237 12362799 ~ 12368943 (-) False G113959
TU134535 lncRNA downstream 138908 12350680 ~ 12362272 (-) True G113959
TU134688 lncRNA upstream 5900 12509870 ~ 12512353 (-) True G114095
TU134689 lncRNA upstream 8859 12512829 ~ 12514622 (-) True G114096
TU134699 lncRNA upstream 14685 12518655 ~ 12522672 (-) True G114103
TU134774 lncRNA upstream 60778 12564748 ~ 12564968 (-) True G114169
TU134781 lncRNA upstream 68377 12572347 ~ 12589625 (-) True G114176
XM_034305794.1 mRNA downstream 8381 12437839 ~ 12492799 (-) False btk
XM_026940674.2 mRNA downstream 8381 12437839 ~ 12492799 (-) False btk
XM_026940667.2 mRNA downstream 8381 12437839 ~ 12492799 (-) False btk
XM_026940668.2 mRNA downstream 8381 12437839 ~ 12492799 (-) False btk
XM_034305792.1 mRNA downstream 8381 12437839 ~ 12492799 (-) True btk
XM_026940795.2 mRNA upstream 23521 12527491 ~ 12549282 (-) False atoh8
XM_026940794.2 mRNA upstream 28668 12532638 ~ 12549281 (-) True atoh8
XM_034305621.1 mRNA upstream 31715 12535685 ~ 12549293 (-) False atoh8
XM_026940457.2 mRNA upstream 77486 12581456 ~ 12662949 (-) False spdl1
XM_034305918.1 mRNA upstream 77487 12581457 ~ 12662947 (-) False spdl1
TU134600 other downstream 77123 12423728 ~ 12424057 (-) True G114013
TU134534 other downstream 138908 12332756 ~ 12362272 (-) False G113959
TU134531 other downstream 150652 12321331 ~ 12350528 (-) False G113959
XR_004578392.1 other downstream 388979 12108844 ~ 12112201 (-) True LOC117597634
TU134224 other downstream 643164 11818878 ~ 11858016 (-) True G113674
TU134690 other upstream 12388 12516358 ~ 12518194 (-) True G114097
TU134829 other upstream 190801 12694771 ~ 12695509 (-) True G114215
TU135100 other upstream 1043542 13547512 ~ 13550775 (-) True G114460
trnae-uuc_1 other upstream 1704946 14208916 ~ 14208987 (-) True trnae-uuc_1
TU135547 other upstream 1716346 14220316 ~ 14221855 (-) True G114873

Expression Profile