Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578481.1 |
| length | 591 |
| lncRNA type | inter_gene |
| GC content | 0.48 |
| exon number | 3 |
| gene id | LOC117597733 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047601.1 |
| NCBI id | CM018547.1 |
| chromosome length | 30450434 |
| location | 10234819 ~ 10241509 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU132995 | lncRNA | downstream | 10168 | 10223944 ~ 10224651 (-) | True | G112569 |
| TU132886 | lncRNA | downstream | 231827 | 10002779 ~ 10002992 (-) | True | G112473 |
| TU132869 | lncRNA | downstream | 264170 | 9970377 ~ 9970649 (-) | True | G112459 |
| TU132863 | lncRNA | downstream | 267376 | 9965785 ~ 9967443 (-) | False | LOC113542827 |
| TU132864 | lncRNA | downstream | 269481 | 9964707 ~ 9965338 (-) | True | G112454 |
| TU133096 | lncRNA | upstream | 112196 | 10353705 ~ 10353904 (-) | True | G112651 |
| TU133142 | lncRNA | upstream | 204140 | 10445649 ~ 10445952 (-) | True | G112689 |
| TU133143 | lncRNA | upstream | 206890 | 10448399 ~ 10448613 (-) | True | G112690 |
| TU133144 | lncRNA | upstream | 207146 | 10448655 ~ 10448962 (-) | True | G112691 |
| TU133207 | lncRNA | upstream | 253789 | 10495298 ~ 10506943 (-) | True | G112745 |
| XM_034305889.1 | mRNA | downstream | 1348 | 10225121 ~ 10233471 (-) | False | cysltr1 |
| XM_026940480.2 | mRNA | downstream | 5036 | 10225121 ~ 10229783 (-) | True | cysltr1 |
| XM_026940479.2 | mRNA | downstream | 11279 | 10175648 ~ 10223540 (-) | False | LOC113542752 |
| XM_026940478.2 | mRNA | downstream | 11279 | 10175648 ~ 10223540 (-) | True | LOC113542752 |
| XM_026940637.2 | mRNA | downstream | 62849 | 10158692 ~ 10171970 (-) | True | rraga |
| XM_026940490.2 | mRNA | upstream | 85272 | 10326781 ~ 10334540 (-) | True | LOC113542757 |
| XM_034306187.1 | mRNA | upstream | 142802 | 10384311 ~ 10397034 (-) | False | LOC113542679 |
| XM_026940344.2 | mRNA | upstream | 142802 | 10384311 ~ 10397034 (-) | True | LOC113542679 |
| XM_026940345.2 | mRNA | upstream | 142802 | 10384311 ~ 10395548 (-) | False | LOC113542679 |
| XM_026940799.2 | mRNA | upstream | 217314 | 10458823 ~ 10462934 (-) | False | hmgn6 |
| XR_003404336.2 | other | downstream | 641494 | 9587828 ~ 9593325 (-) | False | si:ch211-153b23.4 |
| XR_003404370.1 | other | downstream | 1752756 | 8481995 ~ 8482063 (-) | True | LOC113542950 |
| TU130424 | other | downstream | 4406261 | 5826230 ~ 5828558 (-) | True | G110290 |
| TU130314 | other | downstream | 4436883 | 5793847 ~ 5797936 (-) | True | G110204 |
| TU130235 | other | downstream | 4545980 | 5687579 ~ 5688839 (-) | False | zgc:113229 |
| XR_003404347.2 | other | upstream | 1018600 | 11260109 ~ 11325468 (-) | False | LOC113542749 |
| TU133937 | other | upstream | 1117629 | 11359138 ~ 11359579 (-) | True | G113398 |
| TU134062 | other | upstream | 1370464 | 11611973 ~ 11612569 (-) | True | G113516 |
| TU134224 | other | upstream | 1577369 | 11818878 ~ 11858016 (-) | True | G113674 |
| XR_004578392.1 | other | upstream | 1867335 | 12108844 ~ 12112201 (-) | True | LOC117597634 |
