RNA id: TU13687


Basic Information

Item Value
RNA id TU13687
length 2613
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G11545
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 20796750 ~ 20799412 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTAACAAAGAGTCAATATCTTTTCAGTCAGTTTTAATCTCAGTCATATGGAAAGTGCCGAGGtacaagtaaaaataatgaTACATTATGTAACTGATAGAATACACATATACAAGAAAACAATTTTTGTTATCTGCCATAGAGGCGGATGGGTCAAAAGACACCTAAATGTTCTAAAGACATCCTTAAATCAAGAATTACTGAATGAGGAAAATTGCTGGGTGTTGTGGGAAAGTGTAGAATGTGGGAAGTAAGAGATTCATTGTGACAAACAGGGCCAGGCATACTGGGACTCAGGCACAAAcattcatatataaatatttactttgtAATACAAAGTATATATAACACACTCACCCATATTTGCActcacacttttcttttttttttttaatttcactaaaCTATTCCTCATCATCTTCCCCTTAGGTTTGTTTGGCCCTACAAAATTAGAAATCTAAATCATTTGGGTTAGCAGTAACATTCTTGTGTTTGACGGAAGAaatttcaagagaaaaaatCCAAAGTGcaacactgtgcacacacattctgaGGACATTTTAgttgatgataaaaataatcaaatcgaacaatataaaaacacaataaattaaCATATTTACCAATATCTTCCAATAATCAATTTAAAGATTTGAATCAATATTACATATAGTGATCATGTACATATGTAatttgtacagaaataaattgtTCTAAACAACAGCATGGTGGAAAAATACAGTTTGCGAATGCATAAGTAATTTACTCCAAGATTTTTTATGATTcaattaattatcattatttaattaatacaataacAAATTAATACAATGGTCAGCCAACCAAATGCAGTACAAATGTTGTCTGTTCTTTAAAAGAATGTATAGAGGGGTGGCACGGTGGTGCAGCAGGCAGtgatgctgcttcacagctccagggtccctgattcgatcctgagctcgggttaatGTCTGTGAGACAATTTGCATGTTCTCAATGTCCACCTGAGttacctcccaaaaaacatgccagtggagtggctactctaaatttctCTTAGTTGCAATGTGTGCGTACATGCTGCCCTGCGATGGACAggtgtcctatccagggtgtatttccactTTGCGACGTGTTCCTGGGACAGCCTCCGgcccaggataaagtggttactgaagatgaatgtgtTAAGAACATTATGTTTCCTCTCATACTTACTGCAGACACAAGTCACTGgctgagctcacagatgcctgttTAGAAGTGCTACATGTGTTAGCATGTTTTAACAACAGGTTTATCCAAAGTCCAACAGATTACAAAGTGTTAAATTACTGTATAAAACAAACTGCTAAAATGATTGTCAAATACGTAGGATTCTCAGATTATCGTACTATTATCCTATATCCAACTGCCAatgcatattcatataaacAGTGCTGAGGAAATACCACAAATATACCTTGGtaaataatttcaaattaaCCTCcattgttcatgttaatgactTAGGAGAAGCAGCGTAATTCTGCCACTAACTGTACAATGCTCAAAACCTTTTTCTGCTTAAAATTACTACAATCCAAAATACTGCAGAAATTTGATTGTTGCTTGCTTtgtaaaaatatcacagtttacagaaagaaaaattcaCAATTTTATAATTAAGGTAAAATATTTGGCCTCGTCTatcttaaaaacatttaaacacagcagtCCACATCAGAAGTAAATTAATAACATCAAATCATATTCCATATTAAAAACGTAATTAGCTTCCATAGTATCATGGCTTATTCATCATTACAGCTATGAAAATGATGTGCTTTAGCCTTTTGTACCATAAGTGCAGttttacacacataaacacacacacacacacacacgggcagtGCCCTGACCTGCACTGTTCTGTTATTTATTGTGCCATATTAATTTTTCCACTCATCTGACACAGTTGCACATTTTGCAGTGTATGTAATCCTGTGTACCACActcttgtgttgtgttgtatgtttgcaccatggtcctggaggaatatTTCGGACCACTGTATACAGATGGGATGATAGAAATCAACTTGACAAAGGTTCAAATGAAAAGACAAGTGAAAGAGTGTGACTTGTTCACTCAGAAGAAGGCTTAGGACTATTCCACATTCTAtgatacacccacacacacacctgacacacacacacacacacatgtggggTTAAAGCACAGCTCAGTCAATCTGACTCACAGGATAATATTTCACATATTCACTCAGGTATTTTCTTTGCCTTTTCCATTCAATATCTCTGCTCAGTTGCAGCACCCTTTTAGTTCTGTTCTTGTCTGCTGTTGTTCTATTCTTtcctttattctttttctttattggTCTGTGTAAAGTTCTGACTGAGCTTCTCATCCTCACATCTCCTAGCATGGGCACTGCTAGGCTGTGAGCTCCTCATGTTCTGCTCTACACCACAAGTATGTAGCTGTATGTTCACATGTATCCCAGGGAGACATCTGGGTAGGGCCTGCTGTCACTAGAATGCTGCTGAGGAGGCTGTGCTGCGAGGCCGCCAATACCCTCCTCTTCAAAGCTCCCCTGAAGACTTCCAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU13662 lncRNA downstream 119904 20674251 ~ 20676846 (-) True G11523
TU13473 lncRNA downstream 273528 20522679 ~ 20523222 (-) True G11349
TU13378 lncRNA downstream 345425 20450329 ~ 20451325 (-) True G11277
TU13337 lncRNA downstream 383552 20412167 ~ 20413198 (-) True G11243
TU13195 lncRNA downstream 694915 20041655 ~ 20101835 (-) True G11119
TU13723 lncRNA upstream 45853 20845265 ~ 20845481 (-) True G11569
XR_003404318.2 lncRNA upstream 66393 20865805 ~ 20866886 (-) True LOC113542610
XR_004577995.1 lncRNA upstream 71383 20870795 ~ 20879814 (-) True LOC117597063
TU14013 lncRNA upstream 438623 21238035 ~ 21239276 (-) True G11806
TU14196 lncRNA upstream 676011 21475423 ~ 21523715 (-) True G11961
XM_034305925.1 mRNA downstream 45202 20733426 ~ 20751548 (-) True ankrd28b
XM_034308803.1 mRNA downstream 67691 20727452 ~ 20729059 (-) True LOC117598413
XM_034307596.1 mRNA downstream 69534 20714462 ~ 20727216 (-) True hacl1
XM_026940151.2 mRNA downstream 69534 20714462 ~ 20727216 (-) False hacl1
XM_026940280.2 mRNA downstream 82992 20698032 ~ 20713758 (-) True colq
XM_026939556.2 mRNA upstream 68959 20868371 ~ 20870748 (-) True twist1b
XM_026939956.1 mRNA upstream 85655 20885067 ~ 20885871 (-) True LOC113542419
XM_026940288.2 mRNA upstream 96957 20896369 ~ 20904243 (-) False macc1
XM_034308915.1 mRNA upstream 96957 20896369 ~ 20904055 (-) False macc1
XM_034308919.1 mRNA upstream 96957 20896369 ~ 20903868 (-) True macc1
TU12869 other downstream 973067 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 1049867 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 1050810 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 1093590 19702611 ~ 19703160 (-) True LOC117597712
trnaq-cug_8 other downstream 1097113 19699566 ~ 19699637 (-) True trnaq-cug_8
XR_004578404.1 other upstream 464165 21263577 ~ 21275341 (-) False rxrbb
TU15196 other upstream 2101939 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 2101939 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 3436880 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 3592118 24391530 ~ 24400755 (-) False si:dkey-92i15.4

Expression Profile