RNA id: TU14196


Basic Information

Item Value
RNA id TU14196
length 1983
lncRNA type read_through
GC content 0.48
exon number 2
gene id G11961
representative True

Chromosome Information

Item Value
chromosome id NC_047595.1
NCBI id CM018541.1
chromosome length 35600603
location 21475423 ~ 21523715 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATCTTTATTCACCAAATTTTGCACACAGAGAAATGAGGGGAAAACACAGTTTATGCAGCAGAAGATGCAGGCAGGCATATTTTGAGAGGAAACcatgaaagtttaaaaaaatttaaaaaaaacattcgaTGCATATTCTGTTTCCATCTCACATGTTGCTTCCGAAGAGAACGATCACAGAAGCTTAGCCACCGtaacatggacacacacacacgcccacacacacacacaaacacacattcagattCACACAAACGATTAGTCACTCCTCCTCAATGGCTGAAGTTAGGAGGATGAAATTTGACCGGCAAAGGTTTTACATTAGTTAATAGCAGATTATATGGCGGAATAATGATGGCATTTGAGATGATGACGtgtcctgctgaaaaaaaacagtaaatcgAGTGCGTTTGTGTTCAGAAAATGATAGCCAGTGCCAACATTAGCTGGAGAAGTCAAAGTGAGAAAAACATGCTCTTATGAGTAATATAAAAAGGGCATGTAAAGAGactaaacattttgtatttaatattaagtCCAGACGTTGGCTCAGGAGCAAAAGAGTGTCGATGTGCTGCTGCAGATGAAGAATGTGTTAAGCTTGAACAAGGTTGTTTCATTCAGTAGATGGAAGAAGTGCAATGTCATGATTATATTGTATGTAAGCATAAATACACTGTACGGTTTGTcgtatatttatgtgtgtgtgtgtgtgtgtgtgtgtgtatgggtgtgtgtgtgtgtatgtttgtgtatacaTTCACTATTCAGacctcttcatttttttcacatttatgttGCAGCctcatgctgatttttttttcacatcaatctacactccatacctcataatgacaaagcaaaaccagatttgtgataactatgcaaatttataaaaagaaaaaactgaaatatcacattgacaaaagtattcagaccctttgctatggTACTTGAAATTcagctcaggtgcatcccatttctctggatcataTTTGAGGTGTTGCTACACTTTGGAGTCTgcctgtggcaaattcaattgattggacTTGATTTGGAAATGCACAAACCTGTCTATATACGGTCTAACAGCTGAAGGGGGGGTGGATTGGGGCAAAAAggtaatttaaagcattttaacatAAGGCtgtgacataataaaatgtggggaaaaaaggaaggggtctgaatagtttctgaatgcactgtgtTTGCATCATGACACAAAAAGCGTTTAATTTGTAAGTGTAGCCCTCAAAGGTGCTTTTAAATGTCAGTTCAAAGTTGAAATAGTCAGATTGGATTTGGCCCGAACTTTTGAGAATAGCATTGTATGTGATCACAGATTAATGCCAGTGTTATACGTATTCCTTgatatttgtatgtgtatagATTTGTCATTTCCGACTAAGATTAATCTGCACTAGGCTTTGTGTGATACAACAGTATTATCATGCCTATACAATAGTACATTGCCATGATATCCAGTGACGTTTATCGTggattatattaccagacctgccaatcATTAGGCgttttgtgtaggagctccaCAAAAACATCGGAGTACGCTAGTGTGAGTTCTCACTGAAAAATACTCCAAAAGAGCATTCTTTTTCTTCCAAATACAATGGGAGCCACTCAACgcataaatctggaatgatgtgtgtaggtgttttgagCGCTCCAATATTAACAGGCACTTACTGGAAGCACACTTACCCCAATCTCTCAAGCTCTCGGCTCATGTGGTGCCCTCGCTTTCTATATATTTAACATCggtttactatatttattataatatggTCAAAACAGCACTTTTGGTATTCGGCTGATAGAGAGAAAAGGTTTTTTGACCTAAAAAGAATCAATAGGCCTACAAAGTGTCAAATCCAAGTGTCAAATCACTTTACAAATATTAatggtgataatgatgattAAATAcactggttgtttttttttttttttttttggactggtG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14013 lncRNA downstream 236147 21238035 ~ 21239276 (-) True G11806
XR_004577995.1 lncRNA downstream 595609 20870795 ~ 20879814 (-) True LOC117597063
XR_003404318.2 lncRNA downstream 608537 20865805 ~ 20866886 (-) True LOC113542610
TU13723 lncRNA downstream 629942 20845265 ~ 20845481 (-) True G11569
TU13687 lncRNA downstream 676011 20796750 ~ 20799412 (-) True G11545
TU14217 lncRNA upstream 10695 21534410 ~ 21535199 (-) True G11974
TU14681 lncRNA upstream 333900 21857615 ~ 21858840 (-) True G12373
TU14683 lncRNA upstream 348561 21872276 ~ 21960299 (-) True G12375
TU14687 lncRNA upstream 403744 21927459 ~ 21930143 (-) True G12377
XR_003404323.2 lncRNA upstream 410968 21934683 ~ 21937785 (-) True LOC113542638
XM_026939965.2 mRNA downstream 102729 21361624 ~ 21372694 (-) True ccdc12
XM_026939890.2 mRNA downstream 200082 21263577 ~ 21275341 (-) False rxrbb
XM_026939891.2 mRNA downstream 200376 21263577 ~ 21275047 (-) True rxrbb
XM_034305781.1 mRNA downstream 200866 21263577 ~ 21274557 (-) False rxrbb
XM_026939915.2 mRNA downstream 336153 21131082 ~ 21139270 (-) True slc6a19b
XM_026939611.2 mRNA upstream 224506 21748221 ~ 21771707 (-) True mtbp
XM_026939729.2 mRNA upstream 268296 21792011 ~ 21882210 (-) True col14a1a
XM_026939584.2 mRNA upstream 369432 21893147 ~ 21925684 (-) True deptor
XM_026939809.2 mRNA upstream 484520 22008235 ~ 22019237 (-) False polr3c
XM_026939808.2 mRNA upstream 484520 22008235 ~ 22019237 (-) True polr3c
XR_004578404.1 other downstream 200082 21263577 ~ 21275341 (-) False rxrbb
TU12869 other downstream 1651740 19816477 ~ 19823683 (-) True G10832
trnaq-cug_9 other downstream 1728540 19746812 ~ 19746883 (-) False trnaq-cug_9
trnaq-uug other downstream 1729483 19745869 ~ 19745940 (-) False trnaq-uug
XR_004578458.1 other downstream 1772263 19702611 ~ 19703160 (-) True LOC117597712
TU15196 other upstream 1377636 22901351 ~ 22908102 (-) False zgc:92606
TU15197 other upstream 1377636 22901351 ~ 22908102 (-) True zgc:92606
TU16308 other upstream 2712577 24236292 ~ 24240079 (-) True LOC117596842
XR_004578322.1 other upstream 2867815 24391530 ~ 24400755 (-) False si:dkey-92i15.4
TU16407 other upstream 3012145 24535860 ~ 24546837 (-) True si:ch211-105c13.3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000037_03873766_03874592.mRNA True 674 mRNA 0.40 2 CI01000037 3873646 ~ 3874684 (-)